tag:blogger.com,1999:blog-9428877478882403342024-03-08T10:21:37.590+01:00OMA BlogLatest news about OMA and the OMA BrowserAdrian Shttp://www.blogger.com/profile/04929280337758171351noreply@blogger.comBlogger44125tag:blogger.com,1999:blog-942887747888240334.post-73344159148039122062023-10-25T09:20:00.001+02:002023-10-25T09:20:06.931+02:00OMA Browser Jul2023 out: 30th release with 2,851 genomes and many new features<p>We have released a new version of the OMA Browser. It is the 30th release covering now 2,851 genomes. As usually we provide updated HOGs, OMA Groups and gene centric orthology predictions across all domains of life, with updated crosslinks to the latest UniProtKB, RefSeq and Ensembl ids and up-to-date Gene Ontology annotations. </p>
<p>This release contains many new features: We now provide ancestral gene ontology function annotations, compute (ancestral) GO enrichment analysis and display ancestral synteny reconstruction.</p>
<div><h3>New genomes</h3></div><div>In this release we added the following new genomes:</div>
<p> </p>
<div><ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">3 new Insects</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/BACDO/info/">Bactrocera dorsalis</a> (Oriental fruit fly)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/AEDAL/info/">Aedes albopictus</a> (Asian tiger mosquito)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TRIPJ/info/">Trichogramma pretiosum</a> (Parasitoid wasp)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">2 new Other Metazoa</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PRICU/info/">Priapulus caudatus</a> (Priapulid worm)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ECHGR/info/">Echinococcus granulosus</a> (Hydatid tapeworm)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">2 new Plants</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/AEGTS/info/">Aegilops tauschii subsp. strangulata</a> (Goatgrass)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CAJCA/info/">Cajanus cajan</a> (Pigeon pea)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">11 new Fungi</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/NEOID/info/">Neolecta irregularis (strain DAH-3)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASPPA/info/">Aspergillus parasiticus</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/XYLHT/info/">Xylona heveae (strain CBS 132557 / TC161)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ZYMTI/info/">Zymoseptoria tritici (strain CBS 115943 / IPO323)</a> (Speckled leaf blotch fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/GLAL2/info/">Glarea lozoyensis (strain ATCC 20868 / MF5171)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/METRR/info/">Metarhizium rileyi (strain RCEF 4871)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PURLI/info/">Purpureocillium lilacinum</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/THACA/info/">Thanatephorus cucumeris (strain AG1-IA)</a> (Rice sheath blight fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PYCCI/info/">Pycnoporus cinnabarinus</a> (Cinnabar-red polypore)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SPRLO/info/">Spraguea lophii (strain 42_110)</a> (Microsporidian parasite)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MUCC1/info/">Mucor circinelloides f. circinelloides (strain 1006PhL)</a> (Mucormycosis agent)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">5 new Protists</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ENTH1/info/">Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TIELA/info/">Tieghemostelium lacteum</a> (Slime mold)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/THETB/info/">Thecamonas trahens ATCC 50062</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/LEPPY/info/">Leptomonas pyrrhocoris</a> (Firebug parasite)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PLAGA/info/">Plasmodium gallinaceum</a> </span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">1 new Proteobacteria</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MARES/info/">Mariprofundus aestuarium</a> </span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">1 new Firmicutes</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U05FI/info/">Firmicutes bacterium Bu12</a> </span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">3 new Actinobacteriota</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01AC/info/">Actinobacteria bacterium CROMO_BS_222_8</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02AC/info/">Actinobacteria bacterium MAG-41</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U03AC/info/">Actinobacteria bacterium Dino_bin11</a> </span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">261 new Other Bacteria</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC034/info/">bacterium Zod_Metabat.1143</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC155/info/">Candidatus Cloacimonetes bacterium 4572_55</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC015/info/">Calditrichaeota bacterium co234_bin30</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC109/info/">candidate division LCP-89 bacterium B3_LCP</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC016/info/">Calditrichaeota bacterium SuakinDeep_MAG45_3</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC051/info/">bacterium BS750m-G18</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC060/info/">bacterium Aved_18-Q3-R54-62_MAXAC.418</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01GE/info/">Gemmatimonadetes bacterium ARS69</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC133/info/">Candidatus Abyssubacteria bacterium SURF_5</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC110/info/">bacterium (candidate division B38) B3_B38</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC140/info/">bacterium HR11 HRbin11</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SULCO/info/">Sulfidibacter corallicola</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC173/info/">Acidobacteria bacterium Mor1</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC064/info/">Holophagales bacterium EsbW_18-Q3-R4-48_BAT3C.4_cln</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC101/info/">Acidobacteria bacterium s2_autometa_2-0</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/LUTPR/info/">Luteitalea pratensis</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC111/info/">Candidatus Aerophobetes bacterium Ae_b3b</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC003/info/">Abitibacteriaceae bacterium CP_BM_RX_R8_36</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ARMRO/info/">Armatimonas rosea</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/FIMGI/info/">Fimbriimonas ginsengisoli</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01AM/info/">Armatimonadetes bacterium AS09scLD_344</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02AM/info/">Armatimonadetes bacterium NC_groundwater_1868_Pr3_B-0.1um_69_17</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U03AM/info/">Armatimonadetes bacterium Ch1</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC023/info/">Abditibacteriota bacterium RGIG7931</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ATRLM/info/">Atribacter laminatus</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC100/info/">Candidatus Atribacteria bacterium AS21ysBPME_310</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC040/info/">Candidatus Coatesbacteria bacterium Zod_Metabat.233</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC143/info/">bacterium BMS3Abin14</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC052/info/">candidate division KSB1 bacterium BS750m-G25</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC053/info/">Candidatus Omnitrophica bacterium BS750m-G34</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC150/info/">Ignavibacteriales bacterium CG07_land_8_20_14_0_80_59_12</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC092/info/">Bacteroidetes bacterium MAG_11</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC059/info/">Chlorobi bacterium Kalu_18-Q3-R12-55_MAXAC.169</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC177/info/">Candidatus Kryptobacter tengchongensis JGI-3</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC055/info/">Ignavibacteria bacterium Vibo_18-Q3-R45-57_BATAC.435</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC068/info/">Ignavibacteriales bacterium NC_groundwater_1911_Pr3_S2p5_40_15</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02BD/info/">Bdellovibrionales bacterium SZAS-2</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U13DE/info/">Deltaproteobacteria bacterium NC_groundwater_823_Pr1_B-0.1um_55_34</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC127/info/">Candidatus Micrarchaeota archaeon B47_G15</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/FLUSA/info/">Fluviispira sanaruensis</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U14DE/info/">Deltaproteobacteria bacterium UWPOB_DELTA4</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01BD/info/">Bdellovibrionales bacterium SZAS-4</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC164/info/">Deltaproteobacteria bacterium RIFOXYA12_FULL_61_11 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC049/info/">bacterium new MAG-396</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC165/info/">Deltaproteobacteria bacterium GWA2_38_16 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC120/info/">Candidatus Bipolaricaulis sibiricus Ch78</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC009/info/">Candidatus Omnitrophica bacterium Modern_marine.mb.319</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC145/info/">Elusimicrobia bacterium HGW-Elusimicrobia-2</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC027/info/">Elusimicrobia bacterium Zod_Metabat.862</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U15DE/info/">Deltaproteobacteria bacterium M_MetaBat.58</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC161/info/">Nitrospirae bacterium CG2_30_70_394</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC093/info/">bacterium MAG_59</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC044/info/">candidate division CSSED10-310 bacterium Zod_Metabat.419</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC078/info/">Candidatus Schekmanbacteria bacterium NC_groundwater_415_Ag_B-0.1um_66_15</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC028/info/">bacterium Zod_Metabat.886</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CALAY/info/">Caldithrix abyssi</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC141/info/">bacterium HR19 HRbin19</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U06CH/info/">Chloroflexi bacterium NC_groundwater_1535_Pr4_S-0.65um_62_11</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02CH/info/">Chloroflexi bacterium FW602_bin.22</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/KTERU/info/">Ktedonosporobacter rubrisoli</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U05CH/info/">Chloroflexi bacterium MAG002</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U04CH/info/">Chloroflexi bacterium SB0661_bin_6</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01CH/info/">Chloroflexi bacterium RRmetagenome_bin17</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U03CH/info/">Chloroflexi bacterium Baikal-deep-G117</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC021/info/">bacterium BIN46</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC058/info/">Candidatus Obscuribacter sp. Fred_18-Q3-R57-64_MAXAC.356</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02FI/info/">Firmicutes bacterium AS04akNAM_72</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC098/info/">bacterium AS04akNAM_5</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC025/info/">Candidatus Delongbacteria bacterium ZodW_Metabat.17</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC065/info/">bacterium AalE_18-Q3-R2-46_BAT3C.1_cln</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC096/info/">Syntrophaceae bacterium UWMA-0184</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DISTH/info/">Dissulfurirhabdus thermomarina</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC174/info/">Deltaproteobacteria bacterium GWC2_55_46</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U18DE/info/">Deltaproteobacteria bacterium NC_groundwater_360_Ag_B-0.1um_69_10</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U19DE/info/">Deltaproteobacteria bacterium NC_groundwater_1540_Pr4_S-0.65um_55_10</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC081/info/">Proteobacteria bacterium C1.bin.36</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC104/info/">Proteobacteria bacterium SpSt-1152</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC070/info/">Desulfobacterales bacterium NC_groundwater_1491_Pr4_B-0.1um_43_5</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC036/info/">Candidatus Zymogeniaceaea bacterium Zod_Metabat.1292</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U16DE/info/">Deltaproteobacteria bacterium NC_groundwater_25_Pr7_B-0.1um_64_59</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC031/info/">Candidatus Anaeroferrophillus wilburensis Zod_Metabat.940</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC090/info/">Candidatus Dadabacteria bacterium MH-Pat-all_metabat2_32</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U17DE/info/">Deltaproteobacteria bacterium NC_groundwater_1648_Pr3_B-0.1um_61_38</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC169/info/">Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC057/info/">Candidatus Eisenbacteria bacterium Fred_18-Q3-R57-64_MAXAC.354</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC042/info/">Elusimicrobia bacterium Zod_Metabat.39</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC002/info/">Candidatus Eremiobacteraeota bacterium CP_BM_RX_R8_7</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U04AM/info/">Armatimonadetes bacterium NC_groundwater_315_Ag_B-0.1um_31_7</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U05AM/info/">Armatimonadetes bacterium NC_groundwater_316_Ag_B-0.1um_55_8</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC024/info/">Candidatus Eremiobacteraeota bacterium SCN18_25_8_15_R3_B_62_28</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC039/info/">candidate division FCPU426 bacterium Zod_Metabat.219</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U03MY/info/">Myxococcales bacterium AS27yjCOA_30</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC041/info/">Candidatus Fermentibacteria bacterium Zod_Metabat.355</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC166/info/">Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U04FI/info/">Firmicutes bacterium Ch29</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CARTR/info/">Carboxydocella thermautotrophica</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/THEFR/info/">Thermanaerosceptrum fracticalcis</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02CL/info/">Clostridia bacterium zrk5</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01CL/info/">Clostridia bacterium AS04akNAM_38</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DETAL/info/">Dethiobacter alkaliphilus</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ALKCA/info/">Alkalicella caledoniensis</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U08FI/info/">Firmicutes bacterium Bu02</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U06FI/info/">Firmicutes bacterium NC_groundwater_661_Ag_B-0.1um_63_60</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC011/info/">Clostridiales bacterium RBS10-35</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01FI/info/">Firmicutes bacterium AS08sgBPME_412</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/LIMPI/info/">Limnochorda pilosa</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U03FI/info/">Firmicutes bacterium AS04akNAM_86</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HYDET/info/">Hydrogenispora ethanolica</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U07FI/info/">Firmicutes bacterium GB_MAG18_067</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC172/info/">PVC group bacterium (ex Bugula neritina AB1) AB1-3</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC168/info/">Candidatus Glassbacteria bacterium RIFCSPLOWO2_12_FULL_58_11 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02GE/info/">Gemmatimonadetes bacterium ARS67</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC146/info/">Candidatus Goldbacteria bacterium HGW-Goldbacteria-1</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC012/info/">candidate division WS2 bacterium BS5B28</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC079/info/">Candidatus Hydrogenedens sp. RI_113</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC124/info/">Candidatus Dadabacteria bacterium J088</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U04GE/info/">Gemmatimonadetes bacterium SB0661_bin_27</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC037/info/">Candidatus Eisenbacteria bacterium Zod_Metabat.137</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC035/info/">Verrucomicrobia bacterium Zod_Metabat.1268</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC089/info/">bacterium MAG-57</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01NT/info/">Nitrospirae bacterium NC_groundwater_240_Ag_S-0.2um_61_13</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC074/info/">Candidatus Tectomicrobia bacterium NC_groundwater_717_Ag_S-0.2um_59_8</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC075/info/">Candidatus Tectomicrobia bacterium NC_groundwater_748_Ag_S-0.65um_67_15</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02CA/info/">Chlamydiae bacterium NC_groundwater_60_Pr7_S-0.65um_42_121</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC071/info/">Candidatus Desantisbacteria bacterium NC_groundwater_1497_Pr4_B-0.1um_33_3</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC032/info/">Candidatus Aureabacteria bacterium Zod_Metabat.1054</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC046/info/">Candidatus Coatesbacteria bacterium Zod_Metabat.53</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC047/info/">Oligoflexia bacterium Zod_Metabat.617</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC019/info/">Candidatus Dependentiae bacterium Go_SlDig_bin_425</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC020/info/">Candidatus Delongbacteria bacterium Go_SlDig_bin_59</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC010/info/">bacterium Modern_marine.mb.62</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC142/info/">bacterium BMS3Bbin03</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC107/info/">Calditrichaeota bacterium CLD2</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC056/info/">bacterium Fred_18-Q3-R57-64_MAXAC.288</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC129/info/">Candidatus Latescibacteria bacterium B68_G9</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC045/info/">Candidatus Latescibacteria bacterium Zod_Metabat.481</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC097/info/">Candidatus Latescibacteria bacterium UWMA-0219</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC156/info/">Candidatus Latescibacteria bacterium ADurb.Bin168</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U03GE/info/">Gemmatimonadetes bacterium RS821</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC167/info/">Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC138/info/">Candidatus Margulisbacteria bacterium RAAC_38_40</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC122/info/">Candidatus Termititenax aidoneus NkOx7-01</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC170/info/">candidate division WOR-1 bacterium RIFOXYB2_FULL_45_9 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC050/info/">Candidatus Marinimicrobia bacterium BS150m-G59</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC017/info/">Candidatus Marinimicrobia bacterium SuakinDeep_MAGBODY_4</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC113/info/">Candidatus Marinimicrobia bacterium MT.SAG.2</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC013/info/">Candidatus Marinimicrobia bacterium SI036_bin79</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC026/info/">Candidatus Mcinerneyibacteriota bacterium ZodW_Metabat.255</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC186/info/">Candidatus Methylomirabilis oxyfera none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC182/info/">Candidatus Vecturithrix granuli none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC144/info/">Candidatus Muirbacterium halophilum BM706</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U04MY/info/">Myxococcales bacterium AS27yjCOA_137</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PERCE/info/">Persicimonas caeni</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U03DE/info/">Deltaproteobacteria bacterium M_MaxBin.025</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U04DE/info/">Deltaproteobacteria bacterium NC_groundwater_736_Ag_S-0.65um_62_10</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U06DE/info/">Deltaproteobacteria bacterium NC_groundwater_1656_Pr3_B-0.1um_70_40</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U05DE/info/">Deltaproteobacteria bacterium Zod_Metabat.937</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02MY/info/">Myxococcales bacterium SURF_8</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U07DE/info/">Deltaproteobacteria bacterium NC_groundwater_1649_Pr3_B-0.1um_64_26</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01MY/info/">Myxococcales bacterium EAC29</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U08DE/info/">Deltaproteobacteria bacterium NP119</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U09DE/info/">Deltaproteobacteria bacterium NC_groundwater_80_Ag_B-0.1um_71_39</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U10DE/info/">Deltaproteobacteria bacterium Fred_18-Q3-R57-64_BATAC.308</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U11DE/info/">Deltaproteobacteria bacterium NC_groundwater_1655_Pr3_B-0.1um_70_22</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01DE/info/">Deltaproteobacteria bacterium M1803</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02DE/info/">Deltaproteobacteria bacterium Fred_18-Q3-R57-64_BAT3C.701</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC134/info/">candidate division NPL-UPA2 bacterium Unc8</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U04NI/info/">Nitrospinae bacterium NC_groundwater_1753_Pr3_B-0.1um_50_18</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01NI/info/">Nitrospinae bacterium nPCRbin9</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U03NI/info/">Nitrospinae bacterium NC_groundwater_1503_Pr4_B-0.1um_56_23</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02NI/info/">Nitrospinae bacterium NC_groundwater_948_Pr1_S-0.2um_39_25</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC163/info/">Nitrospinae bacterium RIFCSPLOWO2_12_FULL_45_22 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U05NT/info/">Nitrospirae bacterium NC_groundwater_1760_Pr3_B-0.1um_42_52</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U03NT/info/">Nitrospirae bacterium NC_groundwater_1776_Pr3_B-0.1um_70_102</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02NT/info/">Nitrospirae bacterium NC_groundwater_891_Pr1_S2p5_65_34</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U04NT/info/">Nitrospirae bacterium NC_groundwater_1774_Pr3_B-0.1um_61_24</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC082/info/">bacterium H5_UNCL2</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC130/info/">Candidatus Omnitrophica bacterium B17_G2</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC076/info/">Candidatus Omnitrophica bacterium NC_groundwater_666_Ag_B-0.1um_57_48</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC094/info/">candidate division WWE3 bacterium W9_Combined_metabat1_117</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC069/info/">Candidatus Kerfeldbacteria bacterium NC_groundwater_1953_Pr3_S-0.2um_48_12</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC073/info/">Candidatus Andersenbacteria bacterium NC_groundwater_813_Pr1_B-0.1um_46_36</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC181/info/">candidate division CPR2 bacterium GW2011_GWC2_39_35 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC147/info/">bacterium CG_4_10_14_0_2_um_filter_33_32</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC171/info/">candidate division CPR3 bacterium GWF2_35_18 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC062/info/">bacterium Kalu_18-Q3-R12-55_BAT3C.2_fly</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC148/info/">bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC063/info/">Candidatus Peregrinibacteria bacterium Lyne_18-Q3-R50-59_MAXAC.411_cln</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC007/info/">Patescibacteria group bacterium MM_PC_MetaG.mb.169</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC087/info/">Candidatus Pacebacteria bacterium LF-bin-483</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC077/info/">Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC112/info/">Candidatus Gracilibacteria bacterium 28_42_T64</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC008/info/">Patescibacteria group bacterium Modern_marine.mb.211</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC179/info/">candidate division Kazan bacterium GW2011_GWA1_50_15 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC061/info/">Candidatus Roizmanbacteria bacterium Kalu_18-Q3-R12-55_MAXAC.194_uni</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC066/info/">Candidatus Niyogibacteria bacterium NC_groundwater_707_Ag_S-0.2um_45_26</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC105/info/">Patescibacteria group bacterium Baikal-deep-G193</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC116/info/">Patescibacteria group bacterium E44_bin74</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC180/info/">Berkelbacteria bacterium GW2011_GWE1_39_12 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC184/info/">candidate division WWE3 bacterium RAAC2_WWE3_1</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U03PL/info/">Planctomycetes bacterium B129_G9</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02PL/info/">Planctomycetes bacterium B143_G9</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U12PL/info/">Planctomycetes bacterium Aved_18-Q3-R54-62_MAXAC.457</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/KUEST/info/">Kuenenia stuttgartiensis</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U05PL/info/">Planctomycetes bacterium E44_bin39</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U04PL/info/">Planctomycetes bacterium J058</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC106/info/">Planctomycetes bacterium SRT547</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U07PL/info/">Planctomycetes bacterium NC_groundwater_38_Pr7_B-0.1um_65_11</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U10PL/info/">Planctomycetes bacterium NC_groundwater_1472_Ag_S-0.65um_69_29</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U09PL/info/">Planctomycetes bacterium NC_groundwater_1474_Ag_S-0.65um_73_34</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U14PL/info/">Planctomycetes bacterium Zod_Metabat.792</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U11PL/info/">Planctomycetes bacterium NC_groundwater_1801_Pr3_B-0.1um_50_33</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U08PL/info/">Planctomycetes bacterium NC_groundwater_288_Ag_S-0.65um_63_14</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U06PL/info/">Planctomycetes bacterium H5_PLA8</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC108/info/">Planctomycetes bacterium Poly30</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01PL/info/">Planctomycetes bacterium NAT2</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U13PL/info/">Planctomycetes bacterium Fred_18-Q3-R57-64_MAXAC.456</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC084/info/">Candidatus Poribacteria bacterium Bin_402</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC132/info/">Candidatus Poribacteria bacterium PCPOR2b</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC033/info/">bacterium Zod_Metabat.1116</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC102/info/">candidate division Zixibacteria bacterium A-C077</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC085/info/">Candidatus Coatesbacteria bacterium Bin_172</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC080/info/">Candidatus Riflebacteria bacterium nHGRbin4</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC131/info/">candidate division KSB1 bacterium B21_G16</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC029/info/">bacterium Zod_Metabat.896</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC118/info/">Candidatus Acididesulfobacter guangdongensis AP2</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC067/info/">Candidatus Schekmanbacteria bacterium NC_groundwater_1829_Pr3_B-0.1um_41_52</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U03SP/info/">Spirochaetes bacterium Zod_Metabat.958</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/BREAD/info/">Brevinema andersonii</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC162/info/">Spirochaetes bacterium GWE1_32_154 none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC099/info/">Spirochaetales bacterium AS27yjCOA_89</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U02SP/info/">Spirochaetes bacterium Zod_Metabat.1289</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01SP/info/">Spirochaetes bacterium COTS27</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U04SP/info/">Spirochaetes bacterium Go_SlDig_bin_244</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC137/info/">Candidatus Sumerlaea chitinivorans BY40</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC114/info/">candidate division TA06 bacterium E44_bin18</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC178/info/">candidate division Zixibacteria bacterium SM23_81</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC183/info/">Candidatus Entotheonella factor none</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/THEAF/info/">Thermodesulfobium acidiphilum</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U12DE/info/">Deltaproteobacteria bacterium EsbW_18-Q3-R4-48_MAXAC.279_cln</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/U01CA/info/">Chlamydiae bacterium AS06rmzACSIP_427</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC022/info/">bacterium RGIG7520</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC014/info/">Nitrospinaceae bacterium SI073_bin188</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC123/info/">Candidatus Hydrogenedentes bacterium J006</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC160/info/">Candidatus Desantisbacteria bacterium CG2_30_40_21</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC006/info/">bacterium OS_PC_MetaG.mb.171</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC135/info/">bacterium UBA9088</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC136/info/">bacterium UBA9089</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC157/info/">bacterium ADurb.Bin236</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC154/info/">Candidatus Cloacimonetes bacterium NORP72</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC004/info/">bacterium KR13_S3.mb.88</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC152/info/">bacterium SP4379</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC048/info/">Candidatus Eisenbacteria bacterium M_DeepCast_400m_m1_028</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PONDE/info/">Pontiella desulfatans</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC176/info/">candidate division TA06 bacterium 32_111</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC115/info/">Candidatus Cloacimonetes bacterium E29_bin43</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC030/info/">candidate division WOR-3 bacterium Zod_Metabat.912</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC038/info/">candidate division WOR-3 bacterium Zod_Metabat.145</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC095/info/">candidate division WOR-3 bacterium Ch92</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC158/info/">bacterium ADurb.Bin243</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC185/info/">candidate division Zixibacteria bacterium RBG-1 none</a> </span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">19 new Archaea</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC086/info/">Candidatus Altiarchaeales archaeon Bin_400</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ODILC/info/">Odinarchaeota archaeon (strain LCB_4)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC005/info/">Nanoarchaeota archaeon KR13_N2.mb.113</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC128/info/">Thermococci archaeon B88_G9</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC117/info/">Candidatus Methanoliparum thermophilum NM1a</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC159/info/">Candidatus Methanohalarchaeum thermophilum HMET1</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC139/info/">Methanophagales archaeon G37ANME1</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC149/info/">Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC091/info/">Candidatus Fermentimicrarchaeum limneticum Sv326</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC018/info/">Candidatus Altiarchaeota archaeon DPANNHV_H2.bin.121</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC125/info/">Thermoplasmata archaeon B1_G16</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC088/info/">Thermoplasmatales archaeon MAG-13</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC043/info/">Candidatus Thermoplasmatota archaeon Zod_Metabat.400</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC054/info/">Candidatus Thalassarchaeum sp. BS30m-G33</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC072/info/">Euryarchaeota archaeon NC_groundwater_1308_Ag_S-0.2um_62_92</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC103/info/">Thaumarchaeota archaeon SJ3.Bin56</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC121/info/">Candidatus Methanosuratus subterraneum Ch88</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC126/info/">archaeon B48_G17</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UC153/info/">Euryarchaeota archaeon ARS1358</a> </span></li>
</ul>
</ul></div>
<div><ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CHICK/info/">Gallus gallus</a> (Chicken)</span></li>
</ul></div>
Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-66416662938340277942022-11-25T16:16:00.001+01:002022-11-25T16:16:54.482+01:00OMA Browser Nov2022 is out: 29th release with 2564 species across all domains of life<p>We have released a new version of the OMA Browser. It is the 29th release covering now 2,564 complete genomes. As usually we provide updated HOGs, OMA Groups and gene centric orthology predictions across all domains of life, with updated crosslinks to the latest UniProtKB, RefSeq and Ensembl ids and up-to-date Gene Ontology annotations.</p><div><h3>New genomes</h3></div><div>In this release we added the following new genomes:</div>
<div><ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">3 new Mammals</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TACAU/info/">Tachyglossus aculeatus</a> (Short-beaked echidna)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CEBIM/info/">Cebus imitator</a> (Panamanian white-faced capuchin)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CERSS/info/">Ceratotherium simum simum</a> (Southern white rhinoceros)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">4 new Birds</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HALLE/info/">Haliaeetus leucocephalus</a> (Bald eagle)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/FALTI/info/">Falco tinnunculus</a> (Common kestrel)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CORMO/info/">Corvus moneduloides</a> (New Caledonian crow)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TYTAL/info/">Tyto alba</a> (Barn owl)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">6 new Other vertebrates</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SCYTO/info/">Scyliorhinus torazame</a> (Cloudy catshark)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CHIPU/info/">Chiloscyllium punctatum</a> (Brownbanded bambooshark)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CROPO/info/">Crocodylus porosus</a> (Saltwater crocodile)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SALMN/info/">Salvator merianae</a> (Argentine black and white tegu)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/VARKO/info/">Varanus komodoensis</a> (Komodo dragon)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/BUFBU/info/">Bufo bufo</a> (European toad)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">6 new Insects</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HELAM/info/">Helicoverpa armigera</a> (Cotton bollworm)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/VANTA/info/">Vanessa tameamea</a> (New Caledonian crow)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PAPMA/info/">Papilio machaon</a> (Old World swallowtail butterfly)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ANOST/info/">Anopheles stephensi</a> (Indo-Pakistan malaria mosquito)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ANOSI/info/">Anopheles sinensis</a> (Mosquito)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CIMLE/info/">Cimex lectularius</a> (Bed bug)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">3 new Other arthropotes</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/VARDE/info/">Varroa destructor</a> (Honeybee mite)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/STEMI/info/">Stegodyphus mimosarum</a> (African social velvet spider)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TIGCA/info/">Tigriopus californicus</a> (Marine copepod)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">9 new Plants</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CHABU/info/">Chara braunii</a> (Braun's stonewort)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TRITD/info/">Triticum turgidum subsp. durum</a> (Durum wheat)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MISSI/info/">Miscanthus sinensis</a> (Japanese silver grass)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SETVI/info/">Setaria viridis</a> (Green bristlegrass)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/BETVV/info/">Beta vulgaris subsp. vulgaris</a> (Beet)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/KALFE/info/">Kalanchoe fedtschenkoi</a> (Lavender scallops)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ERYGU/info/">Erythranthe guttata</a> (Yellow monkey flower)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/QUELO/info/">Quercus lobata</a> (Valley oak)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/EUTSA/info/">Eutrema salsugineum</a> (Saltwater cress)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">29 new Fungi</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASPBC/info/">Aspergillus brasiliensis (strain CBS 101740 / IMI 381727 / IBT 21946)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASPN1/info/">Aspergillus novofumigatus (strain IBT 16806)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASPA1/info/">Aspergillus aculeatus (strain ATCC 16872 / CBS 172.66 / WB 5094)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASPCI/info/">Aspergillus calidoustus</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASPV1/info/">Aspergillus violaceofuscus (strain CBS 115571)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PETAA/info/">Petromyces alliaceus</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PENRF/info/">Penicillium roqueforti (strain FM164)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TRIRC/info/">Trichophyton rubrum (strain ATCC MYA-4607 / CBS 118892)</a> (Athlete's foot fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/COCPS/info/">Coccidioides posadasii (strain RMSCC 757 / Silveira)</a> (Valley fever fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UNCRE/info/">Uncinocarpus reesii (strain UAMH 1704)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/AURSE/info/">Aureobasidium subglaciale (strain EXF-2481)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/BAUPA/info/">Baudoinia panamericana (strain UAMH 10762)</a> (Angels' share fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/UNCNE/info/">Uncinula necator</a> (Grape powdery mildew)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SCYLI/info/">Scytalidium lignicola</a> (Hyphomycete)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CORDF/info/">Cordyceps confragosa</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/FUSCU/info/">Fusarium culmorum</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PSEDA/info/">Pseudallescheria apiosperma</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/OPHP1/info/">Ophiostoma piceae (strain UAMH 11346)</a> (Sap stain fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CHATD/info/">Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MYCTT/info/">Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ROSNE/info/">Rosellinia necatrix</a> (White root-rot fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DIURU/info/">Diutina rugosa</a> (Yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SPIPD/info/">Spizellomyces punctatus (strain DAOM BR117)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ENTBH/info/">Enterocytozoon bieneusi (strain H348)</a> (Microsporidian parasite)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/NOSB1/info/">Nosema bombycis (strain CQ1 / CVCC 102059)</a> (Microsporidian parasite)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/VITCO/info/">Vittaforma corneae (strain ATCC 50505)</a> (Microsporidian parasite)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/EDHAE/info/">Edhazardia aedis (strain USNM 41457)</a> (Microsporidian parasite)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/NEMP3/info/">Nematocida parisii (strain ERTm3)</a> (Nematode killer fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/NEMS1/info/">Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)</a> (Nematode killer fungus)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">9 new Protists</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TRYRA/info/">Trypanosoma rangeli</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PLARL/info/">Plasmodium relictum</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PLAFC/info/">Plasmodium falciparum (isolate Camp / Malaysia)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PLAFX/info/">Plasmodium falciparum (isolate HB3)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PLACD/info/">Plasmodium cynomolgi (strain B)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PLAGO/info/">Plasmodium gonderi</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SYMMI/info/">Symbiodinium microadriaticum</a> (Dinoflagellate)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/GLOUD/info/">Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SAPDV/info/">Saprolegnia diclina (strain VS20)</a> </span></li>
</ul>
</ul></div>
<div><h3>Updated genomes</h3></div><div>the following species were updated for this release.</div><div><ul><li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TAKRU/info/">Takifugu rubripes</a> (Japanese pufferfish)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/XIPMA/info/">Xiphophorus maculatus</a> (Southern platyfish)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ORENI/info/">Oreochromis niloticus</a> (Nile tilapia)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/GADMO/info/">Gadus morhua</a> (Atlantic cod)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ESOLU/info/">Esox lucius</a> (Northern pike)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DANRE/info/">Danio rerio</a> (Zebrafish)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ORNAN/info/">Ornithorhynchus anatinus</a> (Duckbill platypus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DIPOR/info/">Dipodomys ordii</a> (Ord's kangaroo rat)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CAVPO/info/">Cavia porcellus</a> (Guinea pig)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/RATNO/info/">Rattus norvegicus</a> (Rat)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MACMU/info/">Macaca mulatta</a> (Rhesus macaque)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PAPAN/info/">Papio anubis</a> (Olive baboon)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/GORGO/info/">Gorilla gorilla gorilla</a> (Western lowland gorilla)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PONAB/info/">Pongo abelii</a> (Sumatran orangutan)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/NOMLE/info/">Nomascus leucogenys</a> (Northern white-cheeked gibbon)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CALJA/info/">Callithrix jacchus</a> (White-tufted-ear marmoset)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CARSF/info/">Carlito syrichta</a> (Philippine tarsier)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/FELCA/info/">Felis catus</a> (Cat)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HORSE/info/">Equus caballus</a> (Horse)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MONDO/info/">Monodelphis domestica</a> (Gray short-tailed opossum)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TAEGU/info/">Taeniopygia guttata</a> (Zebra finch)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/XENTR/info/">Xenopus tropicalis</a> (Western clawed frog)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TRICA/info/">Tribolium castaneum</a> (Red flour beetle)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DROME/info/">Drosophila melanogaster</a> (Fruit fly)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MUSAM/info/">Musa acuminata subsp. malaccensis</a> (Wild banana)</span></li>
</ul></div>Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-58537508303350224582022-01-21T15:51:00.000+01:002022-01-21T15:51:14.008+01:00OMA Browser Dec2021 is out! 28th release with 2496 complete genomes<p>We have released a new update of the OMA Browser. It is the 28th
release covering now 2,496 complete genomes. As usually we provide
updated HOGs, OMA Groups and gene centric orthology predictions across
all domains of life, with updated crosslinks to the latest UniProtKB,
RefSeq and Ensembl ids and up-to-date Gene Ontology annotations.</p>
<div><h3 style="text-align: left;">New genomes</h3></div>
<div>In this release we added the following new genomes:</div>
<div><ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">5 new mammals</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/BOBOX/info/">Bos indicus x Bos taurus</a> (Hybrid cattle)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/BALMU/info/">Balaenoptera musculus</a> (Blue whale)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SURSU/info/">Suricata suricatta</a> (Meerkat)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/RHIFE/info/">Rhinolophus ferrumequinum</a> (Greater horseshoe bat)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/VOMUR/info/">Vombatus ursinus</a> (Common wombat)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">4 new birds</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PHACC/info/">Phasianus colchicus</a> (Common pheasant)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CHLGU/info/">Chloebia gouldiae</a> (Gouldian finch)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/STRHB/info/">Strigops habroptila</a> (Kakapo)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ATHCN/info/">Athene cunicularia</a> (Burrowing owl)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">12 new fishes and snakes<br /></span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CALMI/info/">Callorhinchus milii</a> (Ghost shark)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ECHNA/info/">Echeneis naucrates</a> (Live sharksucker)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SPAAU/info/">Sparus aurata</a> (Gilthead sea bream)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ORYJA/info/">Oryzias javanicus</a> (Javanese ricefish)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/GAMAF/info/">Gambusia affinis</a> (Western mosquitofish)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SALFA/info/">Salarias fasciatus</a> (Jewelled blenny)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/OREAU/info/">Oreochromis aureus</a> (Israeli tilapia)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SALTR/info/">Salmo trutta</a> (Brown trout)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ELEEL/info/">Electrophorus electricus</a> (Electric eel)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SINGR/info/">Sinocyclocheilus grahami</a> (Dianchi golden-line fish)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PODMU/info/">Podarcis muralis</a> (Wall lizard)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PSETE/info/">Pseudonaja textilis</a> (Eastern brown snake)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">12 new non-vertebrata animals</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PATMI/info/">Patiria miniata</a> (Bat star)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/LYTVA/info/">Lytechinus variegatus</a> (Green sea urchin)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TOXCA/info/">Toxocara canis</a> (Canine roundworm)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/WUCBA/info/">Wuchereria bancrofti</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/NECAM/info/">Necator americanus</a> (Human hookworm)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ANGCS/info/">Angiostrongylus costaricensis</a> (Nematode worm)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HAECO/info/">Haemonchus contortus</a> (Barber pole worm)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HAEPC/info/">Haemonchus placei</a> (Barber's pole worm)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/NIPBR/info/">Nippostrongylus brasiliensis</a> (Rat hookworm)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ROMCU/info/">Romanomermis culicivorax</a> (Nematode worm)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ECHMU/info/">Echinococcus multilocularis</a> (Fox tapeworm)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TAEMU/info/">Taenia multiceps</a> (Coenurus tapeworm)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">7 new plants</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASPOF/info/">Asparagus officinalis</a> (Garden asparagus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PAPSO/info/">Papaver somniferum</a> (Opium poppy)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CANSA/info/">Cannabis sativa</a> (Hemp)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PRUDU/info/">Prunus dulcis</a> (Almond)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ROSCH/info/">Rosa chinensis</a> (China rose)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/EUCGR/info/">Eucalyptus grandis</a> (Flooded gum)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CITCL/info/">Citrus clementina</a> (Clementine)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">21 new fungi</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PNEMU/info/">Pneumocystis murina (strain B123)</a> (Mouse pneumocystis pneumonia agent)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASPTC/info/">Aspergillus tubingensis (strain CBS 134.48)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PEND2/info/">Penicillium digitatum (strain PHI26 / CECT 20796)</a> (Green mold)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/EPING/info/">Epicoccum nigrum</a> (Soil fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/VERA1/info/">Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136)</a> (Verticillium wilt of alfalfa)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/FUSV7/info/">Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CHAGB/info/">Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)</a> (Soil fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CANMX/info/">Candida maltosa (strain Xu316)</a> (Yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CLAL4/info/">Clavispora lusitaniae (strain ATCC 42720)</a> (Yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ERECY/info/">Eremothecium cymbalariae (strain CBS 270.75 / DBVPG 7215 / KCTC 17166 / NRRL Y-17582)</a> (Yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/GLOTA/info/">Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617)</a> (Brown rot fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ARMOS/info/">Armillaria ostoyae</a> (Armillaria root rot fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SERL3/info/">Serpula lacrymans var. lacrymans (strain S7.3)</a> (Dry rot fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DACPD/info/">Dacryopinax primogenitus (strain DJM 731)</a> (Brown rot fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TRIAC/info/">Trichosporon asahii var. asahii (strain CBS 8904)</a> (Yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/RHOTO/info/">Rhodosporidium toruloides</a> (Yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/KALBG/info/">Kalmanozyma brasiliensis (strain GHG001)</a> (Yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/WALMC/info/">Wallemia mellicola (strain ATCC MYA-4683 / CBS 633.66)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ALLM3/info/">Allomyces macrogynus (strain ATCC 38327)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/RHIZD/info/">Rhizopus microsporus</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CONC2/info/">Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638)</a> </span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">3 new proteobacteria</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/IDESA/info/">Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/LEGSP/info/">Legionella spiritensis</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DESAL/info/">Desulfatibacillum aliphaticivorans</a> </span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">6 new other bacteria</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/STRNE/info/">Streptomyces netropsis</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/NIADE/info/">Niabella drilacis (strain DSM 25811 / CCM 8410 / LMG 26954 / E90)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ROSEK/info/">Roseivirga ehrenbergii (strain DSM 102268 / JCM 13514 / KCTC 12282 / NCIMB 14502 / KMM 6017)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/FORAG/info/">Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CHRP1/info/">Chryseobacterium sp. (strain P1-3)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/FLABM/info/">Flavobacteria bacterium (strain MS024-2A)</a> </span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">2 new Archaea</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HALVU/info/">Halorubrum vacuolatum</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CALS0/info/">Caldiarchaeum subterraneum</a> </span></li>
</ul>
</ul></div>
<div><h3 style="text-align: left;">Updated genomes</h3></div>
<div>Additionally we updated the following genomes:</div>
<div><ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/BRAFL/info/">Branchiostoma floridae</a> (Florida lancelet)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MOUSE/info/">Mus musculus</a> (Mouse)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HYPDU/info/">Hypsibius dujardini</a> (Water bear)</span></li>
</ul></div>
Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0Switzerland47.3850869 8.524482746.635985612942491 7.4258498875 48.134188187057504 9.6231155125tag:blogger.com,1999:blog-942887747888240334.post-52656732494500574652021-05-11T16:12:00.001+02:002021-05-12T08:10:33.193+02:00OMA Browser Apr2021 is out! 27th release with 2,424 genomes<div><p>We have released a new update of the OMA Browser. It is the 27th release covering now 2,424 complete genomes. As usually we provide updated HOGs, OMA Groups and gene centric orthology predictions across all domains of life, with updated crosslinks to the latest UniProtKB, RefSeq and Ensembl ids and up-to-date Gene Ontology annotations.</p><h3 style="text-align: left;">New genomes</h3></div><div>In this release we added the following new genomes:</div>
<div>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">1 new mammal</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MANJA/info/">Manis javanica</a> (Malayan pangolin)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">1 new bird</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ANAPP/info/">Anas platyrhynchos platyrhynchos</a> (Northern mallard)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">8 new fishes</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ANGAN/info/">Anguilla anguilla</a> (European freshwater eel)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MOLML/info/">Mola mola</a> (Ocean sunfish)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/KRYMA/info/">Kryptolebias marmoratus</a> (Mangrove killifish)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/POERE/info/">Poecilia reticulata</a> (Guppy)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASTCA/info/">Astatotilapia calliptera</a> (Eastern happy)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/AMPCI/info/">Amphilophus citrinellus</a> (Midas cichlid)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/AMPPE/info/">Amphiprion percula</a> (Orange clownfish)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SALSA/info/">Salmo salar</a> (Atlantic salmon)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">9 new insects</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DROBS/info/">Drosophila busckii</a> (Fruit fly)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DROSZ/info/">Drosophila suzukii</a> (Spotted-wing drosophila fruit fly)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DROGU/info/">Drosophila guanche</a> (Fruit fly)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DROOB/info/">Drosophila obscura</a> (Fruit fly)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DROMI/info/">Drosophila miranda</a> (Fruit fly)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DROHY/info/">Drosophila hydei</a> (Fruit fly)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DROAR/info/">Drosophila arizonae</a> (Fruit fly)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DRONA/info/">Drosophila navojoa</a> (Fruit fly)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DRONM/info/">Drosophila novamexicana</a> </span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">2 new non-vertebtata animals</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASTRU/info/">Asterias rubens</a> (Common European starfish)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ACAPL/info/">Acanthaster planci</a> (Crown-of-thorns starfish)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">4 new plants</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ACTCC/info/">Actinidia chinensis var. chinensis</a> (Chinese soft-hair kiwi)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CYNCS/info/">Cynara cardunculus var. scolymus</a> (Globe artichoke)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/COFCA/info/">Coffea canephora</a> (Robusta coffee)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CAPAN/info/">Capsicum annuum</a> (Capsicum pepper)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">50 new fungi</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PROLT/info/">Protomyces lactucaedebilis</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DACHA/info/">Dactylellina haptotyla (strain CBS 200.50)</a> (Nematode-trapping fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/EXODN/info/">Exophiala dermatitidis (strain ATCC 34100 / CBS 525.76 / NIH/UT8656)</a> (Black yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/EXOME/info/">Exophiala mesophila</a> (Black yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ENDPU/info/">Endocarpon pusillum (strain Z07020 / HMAS-L-300199)</a> (Lichen-forming fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASPC5/info/">Aspergillus carbonarius (strain ITEM 5010)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ASPNG/info/">Aspergillus niger</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PENDC/info/">Penicillium decumbens</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PENNA/info/">Penicillium nalgiovense</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PENPA/info/">Penicillium patulum</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TALIS/info/">Talaromyces islandicus</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/AJEDR/info/">Ajellomyces dermatitidis (strain ER-3 / ATCC MYA-2586)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/AJECH/info/">Ajellomyces capsulatus (strain H143)</a> (Darling's disease fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/AJEC8/info/">Ajellomyces capsulatus (strain H88)</a> (Darling's disease fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/AJECN/info/">Ajellomyces capsulatus (strain NAm1 / WU24)</a> (Darling's disease fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ARTOC/info/">Arthroderma otae (strain ATCC MYA-4605 / CBS 113480)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ARTGP/info/">Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TRIIM/info/">Trichophyton interdigitale (strain MR816)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PARBD/info/">Paracoccidioides brasiliensis (strain Pb18)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/BOTPV/info/">Botryosphaeria parva (strain UCR-NP2)</a> (Grapevine canker fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ALTAL/info/">Alternaria alternata</a> (Alternaria rot fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/COCH5/info/">Cochliobolus heterostrophus (strain C5 / ATCC 48332 / race O)</a> (Southern corn leaf blight fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MARBU/info/">Marssonina brunnea f. sp. multigermtubi (strain MB_m1)</a> (Marssonina leaf spot fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/COLGC/info/">Colletotrichum gloeosporioides (strain Cg-14)</a> (Anthracnose fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/METAQ/info/">Metarhizium acridum (strain CQMa 102)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/FUSPO/info/">Fusarium poae</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/STAC4/info/">Stachybotrys chlorohalonata (strain IBT 40285)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SORMK/info/">Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CANAR/info/">Candida auris</a> (Yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/LACFM/info/">Lachancea fermentati</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/NAUCC/info/">Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630)</a> (Yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/NAUDC/info/">Naumovozyma dairenensis (strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 / NRRL Y-12639)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TETBL/info/">Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7)</a> (Yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TETPH/info/">Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5)</a> (Yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TRAPU/info/">Trametes pubescens</a> (White-rot fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/AGABU/info/">Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)</a> (White button mushroom)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ARMGA/info/">Armillaria gallica</a> (Bulbous honey fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SCHCM/info/">Schizophyllum commune (strain H4-8 / FGSC 9210)</a> (Split gill fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HYPSF/info/">Hypholoma sublateritium (strain FD-334 SS-4)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PUCT1/info/">Puccinia triticina (isolate 1-1 / race 1 (BBBD))</a> (Brown leaf rust fungus)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TILAU/info/">Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MALS4/info/">Malassezia sympodialis (strain ATCC 42132)</a> (Atopic eczema-associated yeast)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/GONPJ/info/">Gonapodya prolifera (strain JEL478)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/PIRSE/info/">Piromyces sp. (strain E2)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ROZAC/info/">Rozella allomycis (strain CSF55)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/TRAHO/info/">Trachipleistophora hominis</a> (Microsporidian parasite)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/RHIIW/info/">Rhizophagus irregularis (strain DAOM 197198w)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ABSGL/info/">Absidia glauca</a> (Pin mould)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/RHIO9/info/">Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880)</a> (Mucormycosis agent)</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SYNRA/info/">Syncephalastrum racemosum</a> (Filamentous fungus)</span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">10 new proteobacteria</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HYPSL/info/">Hyphomicrobium sulfonivorans</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/RHOSU/info/">Rhodovulum sulfidophilum</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MAGSQ/info/">Magnetospira sp. (strain QH-2)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SPHMC/info/">Sphingopyxis macrogoltabida</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SOVGS/info/">Solemya velum gill symbiont</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HALAF/info/">Halomonas anticariensis (strain DSM 16096 / CECT 5854 / LMG 22089 / FP35)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/AVIPA/info/">Avibacterium paragallinarum</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MORCB/info/">Moraxella catarrhalis (strain BBH18)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SALHC/info/">Salinisphaera hydrothermalis (strain C41B8)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/DESGG/info/">Desulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759)</a> </span></li>
</ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif">12 new other bacteria</span></li>
<ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MYCCU/info/">Mycolicibacterium chubuense</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MICS3/info/">Micromonospora sp. (strain ATCC 39149 / NRRL 15099 / SCC 1413)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/STRGA/info/">Streptomyces glaucescens</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/STRLN/info/">Streptomyces lincolnensis</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SYNPV/info/">Synechococcus sp. (strain WH7805)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ALIAG/info/">Alicyclobacillus acidoterrestris (strain ATCC 49025 / DSM 3922 / CIP 106132 / NCIMB 13137 / GD3B)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/BACCI/info/">Bacillus circulans</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/THEVU/info/">Thermoactinomyces vulgaris</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ENTFD/info/">Enterococcus faecium (strain ATCC BAA-472 / TX0016 / DO)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ENTI1/info/">Enterococcus italicus (strain DSM 15952 / LMG 22039 / TP 1.5)</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ENTTH/info/">Enterococcus thailandicus</a> </span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/ANAHA/info/">Anaerostipes hadrus</a></span></li>
</ul>
</ul><div><br /></div><h3 style="text-align: left;">Updated Genomes:</h3><div>Additionally we updated the following genomes:</div>
<div><ul>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/MOUSE/info/">Mus musculus</a> (Mouse): Ensembl 102; GRCm38.p6; GCA_000001635.8</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/HUMAN/info/">Homo sapiens</a> (Human): Ensembl 102; ; GRCh38</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/BOVIN/info/">Bos taurus</a> (Bovine): Ensembl 102; ARS-UCD1.2; GCA_002263795.2</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/CHICK/info/">Gallus gallus</a> (Chicken): Ensembl 102; GRCg6a; GCA_000002315.5</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/STRPU/info/">Strongylocentrotus purpuratus</a> (Purple sea urchin): Ensembl Metazoa 49; Spur_5.0; GCA_000002235.4</span></li>
<li><span face="Helvetia Neue, Arial, Helvetica, sans-serif"><a href="https://omabrowser.org/oma/genome/SOLLC/info/">Solanum lycopersicum</a> (Tomato): Ensembl Plants 49; SL3.0; GCA_000188115.3</span></li>
</ul></div>
</div>Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-70840777927520792932020-02-18T15:40:00.003+01:002020-02-18T15:40:27.330+01:0026th OMA release (Jan 2020) with 2326 species<div style="background-color: white; color: #555544; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">
<span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">We have released a new update of the OMA Browser. It is the 26th release covering now 2326 complete genomes. As usually we provide updated HOGs, OMA Groups and gene centric orthology predictions across all domains of life, with updated crosslinks to the latest UniProtKB, RefSeq and Ensembl ids and up-to-date Gene Ontology annotations. </span></div>
<div style="background-color: white; color: #555544; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">
<span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><br /></span></div>
<div style="background-color: white; color: #555544; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">
<div>
<span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">In this release we added the following new genomes:</span></div>
</div>
<ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">13 new Metazoa</span></li>
<ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=BRALA">Branchiostoma lanceolatum</a> (Common lancelet)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CYNSE">Cynoglossus semilaevis</a> (Tongue sole)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HAPBU">Haplochromis burtoni</a> (Burton's mouthbrooder)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=NEOBR">Neolamprologus brichardi</a> (Fairy cichlid)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ESOLU">Esox lucius</a> (Northern pike)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CAPHI">Capra hircus</a> (Goat)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=EQUAS">Equus asinus</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PARMJ">Parus major</a> (Great tit)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=JUNHY">Junco hyemalis</a> (Dark-eyed junco)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SERCA">Serinus canaria</a> (Island canary)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MELUD">Melopsittacus undulatus</a> (Budgerigar)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CHEAB">Chelonoidis abingdonii</a> (Abingdon island giant tortoise)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=XENLA">Xenopus laevis</a> (African clawed frog)</span></li>
</ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">6 new Viridiplantae</span></li>
<ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PICGL">Picea glauca</a> (White spruce)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PICSI">Picea sitchensis</a> (Sitka spruce)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PINTA">Pinus taeda</a> (Loblolly pine)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ZOSMR">Zostera marina</a> (Eelgrass)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=DAUCS">Daucus carota subsp. sativus</a> (Carrot)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=TOBAC">Nicotiana tabacum</a> (Common tobacco)</span></li>
</ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">15 new Opisthokonta</span></li>
<ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=FONAL">Fonticula alba</a> (Slime mold)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CANTE">Candida tenuis</a> (Yeast)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=BRALA">Branchiostoma lanceolatum</a> (Common lancelet)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CYNSE">Cynoglossus semilaevis</a> (Tongue sole)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HAPBU">Haplochromis burtoni</a> (Burton's mouthbrooder)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=NEOBR">Neolamprologus brichardi</a> (Fairy cichlid)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ESOLU">Esox lucius</a> (Northern pike)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CAPHI">Capra hircus</a> (Goat)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=EQUAS">Equus asinus</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PARMJ">Parus major</a> (Great tit)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=JUNHY">Junco hyemalis</a> (Dark-eyed junco)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SERCA">Serinus canaria</a> (Island canary)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MELUD">Melopsittacus undulatus</a> (Budgerigar)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CHEAB">Chelonoidis abingdonii</a> (Abingdon island giant tortoise)</span></li>
</ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">4 new Protists</span></li>
<ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CAVFA">Cavenderia fasciculata (strain SH3)</a> (Slime mold)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=GUITH">Guillardia theta</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PHYSP">Phytophthora sojae (strain P6497)</a> (Soybean stem and root rot agent)</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PLAHL">Plasmopara halstedii</a> (Downy mildew of sunflower)</span></li>
</ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">1 new Archaea</span></li>
<ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=NANST">Nanobsidianus stetteri</a> </span></li>
</ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">14 new Bacteria</span></li>
<ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=NOCSI">Nocardioides simplex</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRA9">Streptomyces albulus</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRA7">Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516)</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRE2">Streptomyces pristinaespiralis (strain ATCC 25486 / DSM 40338 / CBS 914.69 / JCM 4507 / NBRC 13074 / NRRL 2958 / 5647)</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRT9">Streptomyces tsukubensis (strain DSM 42081 / NBRC 108919 / NRRL 18488 / 9993)</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRV1">Streptomyces viridosporus (strain ATCC 14672 / DSM 40746 / JCM 4963 / KCTC 9882 / NRRL B-12104 / FH 1290)</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=THET7">Thermosulfidibacter takaii (strain DSM 17441 / JCM 13301 / NBRC 103674 / ABI70S6)</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CHRTP">Chroococcidiopsis thermalis (strain PCC 7203)</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CLOS4">Clostridium sp. (strain ATCC 29733 / VPI C48-50)</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=METTV">Methylobacter tundripaludum (strain ATCC BAA-1195 / DSM 17260 / SV96)</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HYDMR">Hydrogenovibrio marinus</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=VIBNE">Vibrio nereis</a> </span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=VIBSN">Vibrio sp. (strain N418)</a> </span></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=DEFTU"><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">Defluviitoga tunisiensis</span></a></li>
</ul>
</ul>
<span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">Additionally we updated the following genome:</span><br />
<ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SOYBN">Glycine max</a> (Soybean)</span></li>
</ul>
<span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">For various genomes, the UniProt Species code changed and has been updated:
</span><br />
<ul>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=AZOOP">Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS)</a> (taxon id: 640081): DECSP → AZOOP</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=BACMK">Bacillus mycoides (strain KBAB4)</a> (taxon id: 315730): BACWK → BACMK</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CROS5">Crocosphaera subtropica (strain ATCC 51142 / BH68)</a> (taxon id: 43989): CYAA5 → CROS5</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CUPPJ">Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)</a> (taxon id: 264198): CUPNJ → CUPPJ</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CUTAS">Cutibacterium acnes (strain SK137)</a> (taxon id: 553199): PROAS → CUTAS</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=GLOC7">Gloeothece citriformis (strain PCC 7424)</a> (taxon id: 65393): CYAP7 → GLOC7</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=GLOV7">Gloeothece verrucosa (strain PCC 7822)</a> (taxon id: 497965): CYAP2 → GLOV7</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=GOTA9">Gottschalkia acidurici (strain ATCC 7906 / DSM 604 / BCRC 14475 / CIP 104303 / NCIMB 10678 / 9a)</a> (taxon id: 1128398): CLOA9 → GOTA9</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HUNCD">Hungateiclostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45)</a> (taxon id: 720554): CLOCD → HUNCD</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HUNT1">Hungateiclostridium thermocellum (strain DSM 1313 / LMG 6656 / LQ8)</a> (taxon id: 637887): CLOTL → HUNT1</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HUNT2">Hungateiclostridium thermocellum (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)</a> (taxon id: 203119): CLOTH → HUNT2</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=LENAE">Lentzea aerocolonigenes</a> (taxon id: 68170): NOCAE → LENAE</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PARTC">Parageobacillus thermoglucosidasius (strain C56-YS93)</a> (taxon id: 634956): GEOTC → PARTC</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PECPM">Pectobacterium parmentieri</a> (taxon id: 1905730): PECSS → PECPM</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PELLD">Pelodictyon luteolum (strain DSM 273 / 2530)</a> (taxon id: 319225): CHLL7 → PELLD</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=RIPO1">Rippkaea orientalis (strain PCC 8801)</a> (taxon id: 41431): CYAP8 → RIPO1</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=RIPO2">Rippkaea orientalis (strain PCC 8802)</a> (taxon id: 395962): CYAP0 → RIPO2</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=RUMCH">Ruminiclostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)</a> (taxon id: 394503): CLOCE → RUMCH</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SACS2">Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)</a> (taxon id: 273057): SULSO → SACS2</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SACS9">Saccharolobus solfataricus (strain 98/2)</a> (taxon id: 555311): SULS9 → SACS9</span></li>
<li><span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=TRIV2">Trichormus variabilis (strain ATCC 29413 / PCC 7937)</a> (taxon id: 240292): ANAVT → TRIV2</span></li>
</ul>
<div>
<span style="font-family: Helvetica Neue, Arial, Helvetica, sans-serif;">A full list of species in the OMA Browser and their update dates is available on our <a href="https://omabrowser.org/oma/release/">release information page</a>.</span></div>
Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com1tag:blogger.com,1999:blog-942887747888240334.post-24268594844045197432019-10-14T12:40:00.000+02:002019-10-14T12:40:49.014+02:00OMA Browser not available on 30.10.2019 from 8am - 6pm CETDue to a planned maintenance window<span class="" style="font-family: Arial; font-size: 11pt;"> </span><span class="" style="font-family: Arial; font-size: 11pt;">at </span><span class="" style="font-family: Arial; font-size: 11pt;">our computing facility the OMA Browser will not be available on Wed 30. October 2019 between 8am and 6pm CET. </span><br />
<br />
Apologies for the inconvenience this may cause.Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com2tag:blogger.com,1999:blog-942887747888240334.post-85740744585777761382019-07-16T10:29:00.002+02:002019-07-16T10:29:24.108+02:0025th OMA Release with 2288 genomes (Jun 2019)<div style="background-color: white; color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">
<span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">We have just released the latest update of the OMA Browser. It is the 25th release covering 2288 genomes. As usually we provide updated HOGs, OMA Groups and gene centric orthology predictions across all domains of life. </span></div>
<div style="background-color: white; color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">
<span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><br /></span></div>
<div style="background-color: white; color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">
<span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">In this release we added the following new genomes:</span></div>
<ul>
<li>31 new Metazoa</li>
<ul>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=EPTBU">Eptatretus burgeri</a> (Inshore hagfish)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ANATE">Anabas testudineus</a> (Climbing perch)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SERDU">Seriola dumerili</a> (Mediterranean greater amberjack)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SCOMX">Scophthalmus maximus</a> (Turbot)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ORYME">Oryzias melastigma</a> (Marine medaka)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CYPVA">Cyprinodon variegatus</a> (Sheepshead minnow)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=AMPOC">Amphiprion ocellaris</a> (Clown anemonefish)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PYGNA">Pygocentrus nattereri</a> (Red-bellied piranha)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ICTPU">Ictalurus punctatus</a> (Channel catfish)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HETGA">Heterocephalus glaber</a> (Naked mole rat)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CAVAP">Cavia aperea</a> (Brazilian guinea pig)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CRIGR">Cricetulus griseus</a> (Chinese hamster)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CERAT">Cercocebus atys</a> (Sooty mangabey)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MACFA">Macaca fascicularis</a> (Crab-eating macaque)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MACNE">Macaca nemestrina</a> (Pig-tailed macaque)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MANLE">Mandrillus leucophaeus</a> (Drill)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=COLAP">Colobus angolensis palliatus</a> (Peters' Angolan colobus)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=RHIBE">Rhinopithecus bieti</a> (Black snub-nosed monkey)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=RHIRO">Rhinopithecus roxellana</a> (Golden snub-nosed monkey)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=AOTNA">Aotus nancymaae</a> (Ma's night monkey)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SAIBB">Saimiri boliviensis boliviensis</a> (Bolivian squirrel monkey)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PROCO">Propithecus coquereli</a> (Coquerel's sifaka)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=VULVU">Vulpes vulpes</a> (Red fox)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=URSAM">Ursus americanus</a> (American black bear)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=URSMA">Ursus maritimus</a> (Polar bear)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PHACI">Phascolarctos cinereus</a> (Koala)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CHRPI">Chrysemys picta bellii</a> (Western painted turtle)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SPHPU">Sphenodon punctatus</a> (Tuatara)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ORCCI">Orchesella cincta</a> (Springtail)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=FOLCA">Folsomia candida</a> (Springtail)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CULSO">Culicoides sonorensis</a> (Biting midge)</li>
</ul>
<br />
<li>5 new Protist</li>
<ul>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PLAKH">Plasmodium knowlesi (strain H)</a> </li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ICHMG">Ichthyophthirius multifiliis (strain G5)</a> (White spot disease agent)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=TRYVY">Trypanosoma vivax (strain Y486)</a> </li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=TRYCI">Trypanosoma congolense (strain IL3000)</a> </li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=TRYCC">Trypanosoma cruzi (strain CL Brener)</a></li>
</ul>
<br />
<li>1 new Viridiplantae</li>
<ul>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PHAAN">Phaseolus angularis</a> (Azuki bean)</li>
</ul>
<br />
<li>18 new Fungi</li>
<ul>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SAICN">Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ARTOA">Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491)</a> (Nematode-trapping fungus)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PENIT">Penicillium italicum</a> (Blue mold)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ARTBC">Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SPHMS">Sphaerulina musiva (strain SO2202)</a> (Poplar stem canker fungus)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=BEABA">Beauveria bassiana</a> (White muscardine disease fungus)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=TRIHA">Trichoderma harzianum</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=EUTLA">Eutypa lata (strain UCR-EL1)</a> (Grapevine dieback disease fungus)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PICSO">Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695)</a> (Hybrid yeast)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CYBJN">Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / CCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542)</a> (Torula yeast)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=OGAPD">Ogataea parapolymorpha (strain ATCC 26012 / BCRC 20466 / JCM 22074 / NRRL Y-7560 / DL-1)</a> (Yeast)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MONPE">Moniliophthora perniciosa (strain FA553 / isolate CP02)</a> (Witches'-broom disease fungus)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=COPC7">Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)</a> (Inky cap fungus)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=USTV1">Microbotryum lychnidis-dioicae (strain p1A1 Lamole / MvSl-1064)</a> (Anther smut fungus)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=RHOGW">Rhodotorula graminis (strain WP1)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MALGO">Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</a> (Dandruff-associated fungus)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=WALI9">Wallemia ichthyophaga (strain EXF-994 / CBS 113033)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=NOSCE">Nosema ceranae (strain BRL01)</a> (Microsporidian parasite)</li>
</ul>
<br />
<li>35 new Bacteria</li>
<ul>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=EEGSY">Eggerthella sp. (strain YY7918)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CORLD">Corynebacterium lipophiloflavum (strain DSM 44291 / CCUG 37336)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MYCGO">Mycobacterium gordonae</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MYCKA">Mycobacterium kansasii</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MYCSH">Mycobacterium shimoidei</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MYCCH">Mycobacterium chelonae</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MYCT3">Mycobacterium thermoresistibile (strain ATCC 19527 / DSM 44167 / CIP 105390 / JCM 6362 / NCTC 10409 / 316)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MYCHD">Mycobacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=INTC7">Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ACTUT">Actinoplanes utahensis</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=NOCAE">Lechevalieria aerocolonigenes</a> (Nocardia aerocolonigenes)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=KITAU">Kitasatospora aureofaciens</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=KITGR">Kitasatospora griseola</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRC2">Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRC3">Streptomyces collinus (strain DSM 40733 / Tu 365)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRDJ">Streptomyces davaonensis (strain DSM 101723 / JCM 4913 / KCC S-0913 / 768)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRFR">Streptomyces fradiae</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRR1">Streptomyces rimosus subsp. rimosus (strain ATCC 10970 / DSM 40260 / JCM 4667 / NRRL 2234)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRR3">Streptomyces rubellomurinus (strain ATCC 31215)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRSH">Streptomyces sp. (strain SPB074)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STREK">Streptomyces sp. (strain SirexAA-E / ActE)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STRTO">Streptomyces toyocaensis</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CHTCT">Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=BACSE">Bacteroides stercoris</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PORCN">Porphyromonas cangingivalis</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PREDD">Prevotella dentalis (strain ATCC 49559 / DSM 3688 / JCM 13448 / NCTC 12043 / ES 2772)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CAPGI">Capnocytophaga gingivalis</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=FLAFP">Flavobacterium frigoris (strain PS1)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=FLASC">Flavobacterium sp. (strain CF136)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=FLABB">Flavobacteria bacterium (strain BBFL7)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SYNE7">Synechococcus elongatus (strain PCC 7942)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SYNP3">Synechococcus sp. (strain ATCC 27167 / PCC 6312)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=NITG3">Nitrospina gracilis (strain 3/211)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MYCHA">Mycoplasma haemolamae (strain Purdue)</a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PEDPL">Pedosphaera parvula (strain Ellin514)</a></li>
</ul>
<br />
</ul>
Additionally, we updated the following genomes:
<br />
<ul>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=GOSHI">Gossypium hirsutum</a> (Upland cotton)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=POPTR">Populus trichocarpa</a> (Western balsam poplar)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SORBI">Sorghum bicolor</a> (Sorghum)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=APIME">Apis mellifera</a> (Honeybee)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ANOGA">Anopheles gambiae</a> (African malaria mosquito)</li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=EIMTE">Eimeria tenella</a> (Coccidian parasite)</li>
</ul>
A full list of species in the OMA Browser and their update dates is available on our <a href="https://omabrowser.org/oma/release/">release information page</a>.Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-53847681040100790182018-12-31T11:25:00.002+01:002018-12-31T11:25:42.433+01:0024th OMA Release with 2198 species (Dec 2018)<div style="background-color: white; color: #555544; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">
<span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">We have just released the latest update of the OMA Browser. It is the 24th release covering 2198 genomes. As usually we provide updated HOGs, OMA Groups and gene centric orthology predictions across all domains of life. </span></div>
<div style="background-color: white; color: #555544; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">
<span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><br /></span></div>
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<span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">In this release we added the following new genomes:</span></div>
<div style="background-color: white; margin: 5px 0px 0px; padding: 0px;">
</div>
<ul>
<li><span style="color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif;"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif; font-size: 15.6px;"><span style="color: #555544;">3 </span><span style="color: #555544;">new </span><span style="color: #555544;">Archaea:</span></span></span></li>
<ul>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HEIAB"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Heimdallarchaeota archaeon (strain B3-JM-08)</span></a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=LOKAC"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Lokiarchaeota archaeon (strain CR_4)</span></a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=THOAR"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Thorarchaeota archaeon (strain OWC)</span></a></li>
</ul>
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<li><span style="color: #555544; font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">6 new Bacteria:</span></li>
<ul>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=POREA"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Porphyromonas endodontalis (strain ATCC 35406 / BCRC 14492 / JCM 8526 / NCTC 13058 / HG 370)</span></a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=BACA3"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Bacillus akibai (strain ATCC 43226 / DSM 21942 / JCM 9157 / 1139)</span></a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=THEPS"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB)</span></a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PSEAA"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Pseudomonas agarici</span></a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ALIF1"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Aliivibrio fischeri (strain ATCC 700601 / ES114)</span></a></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ALIFM">Aliivibrio fischeri (strain MJ11)</a></span></li>
</ul>
<br />
<li><span style="color: #555544; font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">6 new Alveolata,</span></li>
<ul>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PLAFO"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Plasmodium falciparum (isolate NF54)</span></a></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PLABA">Plasmodium berghei (strain Anka)</a></span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=THEPA">Theileria parva</a> (East coast fever infection agent)</span></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=TOXGV"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Toxoplasma gondii (strain ATCC 50861 / VEG)</span></a></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PSEPJ"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Pseudocohnilembus persalinus</span></a></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=STYLE">Stylonychia lemnae</a></span></li>
</ul>
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<li><span style="color: #555544; font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">10 new Fungi:</span></li>
<ul>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PYROM"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Pyronema omphalodes (strain CBS 100304)</span></a></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=COCIM">Coccidioides immitis (strain RS)</a> (Valley fever fungus)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CONA1">Coniosporium apollinis (strain CBS 100218)</a> (Rock-inhabiting black yeast)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=COCSN">Cochliobolus sativus (strain ND90Pr / ATCC 201652)</a> (Common root rot and spot blotch fungus)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PYRTR">Pyrenophora tritici-repentis (strain Pt-1C-BFP)</a> (Wheat tan spot fungus)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CORMM">Cordyceps militaris (strain CM01)</a> (Caterpillar fungus)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MAGP6">Magnaporthiopsis poae (strain ATCC 64411 / 73-15)</a> (Kentucky bluegrass fungus)</span></li>
<li><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CYBFA"><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;">Cyberlindnera fabianii</span></a></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=GRIFR">Grifola frondosa</a> (Maitake)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CRYGR">Cryptococcus gattii serotype B (strain R265)</a> (Filobasidiella gattii)</span></li>
</ul>
<br />
<li><span style="color: #555544; font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">5 new non-alveolata Protists:</span></li>
<ul>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=GIAIA">Giardia intestinalis (strain P15)</a></span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PLABS">Plasmodiophora brassicae</a> </span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CYAM1">Cyanidioschyzon merolae (strain 10D)</a> (Red alga)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=THAOC">Thalassiosira oceanica</a> (Marine diatom)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PHYPN">Phytophthora parasitica (strain INRA-310)</a></span></li>
</ul>
<br />
<li><span style="color: #555544; font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">3 new Viridiplantae:</span></li>
<ul>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HELAN">Helianthus annuus</a> (Common sunflower)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PHAVU">Phaseolus vulgaris</a> (Kidney bean)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=GOSAR">Gossypium arboreum</a> (Tree cotton)</span></li>
</ul>
<br />
<li><span style="color: #555544; font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">1 new Metazoa</span></li>
<ul>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HIPCM">Hippocampus comes</a> (Tiger tail seahorse)</span></li>
</ul>
</ul>
<span style="color: #555544; font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">Also, we have updated a few important model organisms including:</span><br />
<ul>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PIGXX">Sus scrofa</a> (Pig)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=WHEAT">Triticum aestivum</a> (Wheat)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MAIZE">Zea mays</a> (Maize)</span></li>
<li><span style="font-family: "helvetica neue" , "arial" , "helvetica" , sans-serif;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HAEIN">Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)</a> </span></li>
</ul>
<div>
<span style="background-color: white; color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">A full list of species and their update dates is available on our <a href="https://omabrowser.org/oma/release/">release information page</a>.</span></div>
<div>
</div>
Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-67210667616071159482018-08-09T10:59:00.001+02:002018-08-09T10:59:04.687+02:00New OMA Release with 2167 species<div style="background-color: white; color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">
We have just released the latest update of the OMA Browser. It is the 23th release covering 2167 genomes.</div>
<div style="background-color: white; color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">
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<div style="background-color: white; color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px; margin: 5px 0px 0px; padding: 0px;">
In this release we added </div>
<div style="background-color: white; margin: 5px 0px 0px; padding: 0px;">
</div>
<ul>
<li style="color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px;">7 new plant species (<a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MARPO" style="font-size: 15.6px;">Liverwort</a><span style="font-size: 15.6px;">, </span><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CHEQI" style="font-size: 15.6px;">Quinoa</a><span style="font-size: 15.6px;">, </span><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=NICAT" style="font-size: 15.6px;">Coyote tobacco</a><span style="font-size: 15.6px;">, </span><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CUCSA" style="font-size: 15.6px;">Cucumber</a><span style="font-size: 15.6px;">, </span><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=LUPAN" style="font-size: 15.6px;">Narrow-leaved blue lupine</a><span style="font-size: 15.6px;">, </span><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=COCAP" style="font-size: 15.6px;">Jute</a><span style="font-size: 15.6px;">, and </span><a href="http://gosra/" style="font-size: 15.6px;">New World cotton</a><span style="font-size: 15.6px;">), </span></li>
<li style="color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px;">13 new animals:</li>
<ul>
<li style="color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px;">5 rodents: <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=FUKDA" style="font-size: 15.6px;">Damaraland mole rat</a><span style="font-size: 15.6px;">, </span><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CHILA" style="font-size: 15.6px;">Long-tailed chinchilla</a><span style="font-size: 15.6px;">, </span><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=OCTDE" style="font-size: 15.6px;">Degu</a><span style="font-size: 15.6px;">, </span><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=JACJA" style="font-size: 15.6px;">Lesser Egyptian jerboa</a><span style="font-size: 15.6px;"> and the </span><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=NANGA" style="font-size: 15.6px;">Northern Israeli blind subterranean mole rat</a></li>
<li><span style="color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif;"><span style="font-size: 15.6px;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=NOTFU"><i>Nothobranchius furzeri</i> (Turquoise killifish)</a> species, </span></span></li>
<li><span style="color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif;"><span style="font-size: 15.6px;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PANPA"><i>Pan paniscus </i>(Pygmy chimpanzee) </a>species</span></span></li>
<li><span style="color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif;"><span style="font-size: 15.6px;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SCHMD"><i>Schmidtea mediterranea</i> (Freshwater planarian flatworm)</a> species</span></span></li>
<li><span style="color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif;"><span style="font-size: 15.6px;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=THECL"><i>Thelazia callipaeda</i> (Oriental eyeworm)</a> species</span></span></li>
<li><span style="color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif;"><span style="font-size: 15.6px;"><i><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MELHA">Meloidogyne hapla</a></i> species</span></span></li>
<li><span style="color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif;"><span style="font-size: 15.6px;"><i><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=OOCBI">Ooceraea biroi </a></i>(Ant) species</span></span></li>
<li><span style="color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif;"><span style="font-size: 15.6px;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=DIACI"><i>Diaphorina citri</i> (Asian citrus psyllid)</a></span></span></li>
<li><span style="color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif;"><span style="font-size: 15.6px;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HYDVU"><i>Hydra vulgaris</i> (Hydra) </a>species</span></span></li>
</ul>
<li style="color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px;"><span style="font-size: 15.6px;">17 new fungi species, </span></li>
<li style="color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px;"><span style="font-size: 15.6px;">7 new </span><i style="font-size: 15.6px;">Protists:</i></li>
<ul>
<li style="color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px;"><span style="font-size: 15.6px;">4 new <i>Plasmodium</i> species</span></li>
<li style="color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px;"><i><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=BODSA">Bodo saltans</a></i> species</li>
<li style="color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px;"><i><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=TRIVA">Trichomonas vaginalis</a></i> species</li>
<li style="color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px;"><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PHYRM">Phytophthora ramorum</a> (Sudden oak death agent) species</li>
</ul>
<li style="color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px;"><span style="font-size: 15.6px;">4 new archaea and </span></li>
<li style="color: #555544; font-family: tahoma, "Trebuchet MS", lucida, helvetica, sans-serif; font-size: 15.6px;"><span style="font-size: 15.6px;">24 new bacteria species.</span></li>
</ul>
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Further, we updated the <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=HORVV">Domesticated barley</a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ARATH"><i>Arabidopsis thaliana</i></a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MOUSE">Mouse</a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PANTR">Chimapanzee</a> and <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ECOLI"><i>Escherichia coli (strain K12)</i></a> species in this release.</div>
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A full list of species and their update dates is available on our <a href="https://omabrowser.org/oma/release/">release information page</a>.</div>
Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-30085223142639279242018-01-15T13:32:00.000+01:002018-01-15T13:32:00.861+01:00New OMA Browser Release (Dec 2017) with 2103 species<span style="background-color: white; color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif; font-size: 13px; line-height: 18.2px;">We have just released the latest update of the OMA Browser. It is the 22th release covering 2103 genomes.</span><br />
<br style="background-color: white; color: #555544; font-family: tahoma, "trebuchet ms", lucida, helvetica, sans-serif; font-size: 13px; line-height: 18.2px;" />
<span style="background-color: white; color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif; font-size: 13px; line-height: 18.2px;">In this release we added 15 new eukaryotes, i.e. three new plants (<i><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=MICCC" target="_blank">Picoplanktonic green alga</a></i>, <i><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ARAAL" target="_blank">Alpine rock-cress</a></i> and <i><a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=BRARP" target="_blank">Chinese cabbage</a></i>), 5 new fungi species (<a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=ASPGL" target="_blank">Aspergillus glaucus</a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CANAL" target="_blank">Candida albicans</a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PICGU" target="_blank">Meyerozyma guilliermondii</a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=KOMPG" target="_blank">Komagataella phaffii</a> and <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SERID" target="_blank">Serendipita indica</a>) and a few early branching eukaryotes (<a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PLAYO">Plasmodium yoelii yoelii</a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=THEAN">Theileria annulata</a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=POLPP">Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500)</a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=LEPSE">Leptomonas seymouri</a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=SALR5">Salpingoeca rosetta (strain ATCC 50818 / BSB-021)</a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=CREFR">Creolimax fragrantissima</a>, <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PHYNI">Phytophthora nicotianae</a> and <a href="https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayOS&p1=PHYPR">Phytophthora parasitica</a>). We also added a few bacteria and archaea species to this release and we updated some of the common model organisms. You can find a detailed list of all the covered species on our website (<a href="http://omabrowser.org/oma/release/">http://omabrowser.org/oma/release/</a>).<br /><br />
The new release comes also with a few improvements and enhancements such as a scalable, interactive viewer for hierarchical orthologous groups; protein domain annotations and domain-based links between orthologous groups; new functionality to retrieve phylogenetic marker genes for a subset of species of interest; a new synteny dot plot viewer; and an overhaul of the programmatic access (REST API and semantic web). Read about the new features in our <a href="https://doi.org/10.1093/nar/gkx1019">latest OMA Browser publication</a>.</span><br />
<br />Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-25774474171824356592017-12-04T21:41:00.000+01:002017-12-04T21:41:15.203+01:00OMA Browser not available due to maintenance workThe OMA Browser will be not available from Mon 4.12.17 from 18:00 UTC to Tue 5.12.2017 14:00 UTC due to electrical safety tests. We apologize for any inconveniences that this may cause.Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-34638282080093475392016-06-10T10:51:00.000+02:002016-06-10T11:00:15.622+02:00New Release (May 2016) with 2024 genomes<span style="background-color: white; color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif; font-size: 13px; line-height: 18.2px;">We have just released the latest update of the OMA Browser. It is the 20th release covering 2024 genomes.</span><br />
<br style="background-color: white; color: #555544; font-family: tahoma, 'Trebuchet MS', lucida, helvetica, sans-serif; font-size: 13px; line-height: 18.2px;" />
<span style="background-color: white; color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif; font-size: 13px; line-height: 18.2px;">In this release we added </span><span style="background-color: white; color: #333333; font-family: "helvetica neue" , "helvetica" , "arial" , sans-serif; font-size: 14px; line-height: 20px;"><i>Sea lamprey</i>, three more <i>Drosophila</i>, the </span><span style="background-color: white; color: #333333; font-family: "helvetica neue" , "helvetica" , "arial" , sans-serif; font-size: 14px; line-height: 20px;"><i>Water bear</i>, another 9 fungi species, </span><span style="background-color: white; color: #333333; font-family: "helvetica neue" , "helvetica" , "arial" , sans-serif; font-size: 14px; line-height: 20px;"><i>Eragrostis tef</i>, and a few more bacteria and archaea</span><span style="background-color: white; color: #333333; font-family: "helvetica neue" , "helvetica" , "arial" , sans-serif; font-size: 14px; line-height: 20px;"> genomes. </span><span style="background-color: white; color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif; font-size: 13px; line-height: 18.2px;">Again, we updated many of the common model organisms. You can find a detailed list of all the covered species on our website (</span><a href="http://omabrowser.org/cgi-bin/gateway.pl?f=InfoMatrix" style="background: rgb(255, 255, 255); color: #669922; font-family: tahoma, 'Trebuchet MS', lucida, helvetica, sans-serif; font-size: 13px; font-weight: bold; line-height: 18.2px; text-decoration: none;">http://omabrowser.org/cgi-bin/gateway.pl?f=InfoMatrix</a><span style="background-color: white; color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif; font-size: 13px; line-height: 18.2px;">).</span><br />
<span style="background-color: white; color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif; font-size: 13px; line-height: 18.2px;"><br class="Apple-interchange-newline" /><span style="line-height: 18.2px;">As usual, the data of the previous release is still available for download.</span></span><br />
<span style="background-color: white; color: #555544; font-family: "tahoma" , "trebuchet ms" , "lucida" , "helvetica" , sans-serif; font-size: 13px; line-height: 18.2px;"><br /></span>
<span style="color: #555544; font-family: tahoma, trebuchet ms, lucida, helvetica, sans-serif;"><span style="background-color: white;"><span style="font-size: 13px; line-height: 18.2px;">The new release comes also with a few improvements and enhancements: We provide domain visualizations among the orthologs and tables can be searched and filtered.</span></span></span><br />
<br />Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-55431236186280658592015-09-23T11:57:00.000+02:002015-09-23T12:45:02.238+02:00New release (Sep2015) with 1970 speciesWe have just released the latest update of the OMA Browser. It is the 19th release covering 1970 genomes.<br />
<br />
In this release we added two new Primates (<i><span class="species">Chlorocebus sabaeus</span></i> and <span class="species"><i>Papio anubis</i>)</span>, another fish (<span class="species"><i>Poecilia formosa</i>)</span>, 18 insects (of which 11 are from the <i>Drosophila</i> clade), 6 other metazoas (<span class="species"><i>Loa loa</i>, </span><i><span class="species">Onchocerca volvulus, </span><span class="species">Tetranychus urticae, </span><span class="species">Strigamia maritima,</span><span class="species"><span class="species">Capitella teleta </span></span></i><span class="species"><span class="species">and</span></span><i><span class="species"><span class="species"> </span></span><span class="species"><span class="species"><span class="species">Mnemiopsis leidyi</span></span></span></i><span class="species">) and 7 new plants (</span><i><span class="species">Oryza nivara,</span><span class="species"> Oryza punctata,</span><span class="species"><span class="species"> Oryza rufipogon, </span></span><span class="species"><span class="species">Prunus persica, </span></span><span class="species"><span class="species">Brassica oleracea, </span></span><span class="species"><span class="species"><span class="species">Theobroma cacao </span></span></span></i><span class="species"><span class="species"><span class="species">and</span></span></span><i><span class="species"><span class="species"><span class="species"> </span></span></span></i><span class="species"><span class="species"><i>Amborella trichopoda</i>)</span>. </span>In this release
we updated again many common model organisms. You can find a detailed
list of all the covered species on our website (<a href="http://omabrowser.org/cgi-bin/gateway.pl?f=InfoMatrix">http://omabrowser.org/cgi-bin/gateway.pl?f=InfoMatrix</a>).<br />
<br />
As usual, the data of the previous release is still available for download.Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-51207695925502395142015-06-18T21:30:00.000+02:002015-06-19T13:23:49.723+02:00Corrupted release - Rollback to Sep2014 releaseDear OMA users,<br />
<br />
We are very sorry to inform you that the latest release of the OMA browser ("Mar 2015"), which has been accessible since 5 June 2015, is unfortunately corrupted. Specifically, in species that were updated in that release, many homologous pairs were erroneously left out in the inference step. We are therefore retracting the "Mar 2015" release and are using the previous release from Sep 2014 again.<br />
<br />
We are now in the process of preparing a new release but this process will take several weeks.<br />
<br />
If you have any question whether your analysis might be affected, feel free to contact us <a href="mailto:contact@omabrowser.org">contact@omabrowser.org</a>.<br />
<br />
We are very sorry for any inconveniences this might have caused.<br />
<br />
Kind regards,<br />
the OMA teamAdrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-52362449334359162642015-06-05T13:23:00.003+02:002015-06-19T13:25:25.124+02:00New OMA release with 1850 species<i><span style="color: red;">Update: this release contained errors and has been retracted. <a href="http://omabrowser.blogspot.co.uk/2015/06/corrupted-release-rollback-to-sep2014.html">More details here</a>.</span></i><br />
<br />
We have just released the latest update of the OMA Browser. It is the 18th release covering 1850 genomes.<br />
<br />
In this release we added two new Primates (<span class="species">Chlorocebus sabaeus</span> and <span class="species">Papio anubis)</span>, another fish (<span class="species">Poecilia formosa)</span>, 6 other animals (<span class="species">Loa loa, </span><span class="species">Onchocerca volvulus, </span><span class="species">Melitaea cinxia, </span><span class="species">Dendroctonus ponderosae, </span><span class="species">Megaselia scalaris and </span><span class="species">Drosophila sechellia) and 7 new plants (</span><span class="species">Oryza nivara,</span><span class="species"> Oryza punctata,</span><span class="species"><span class="species"> Oryza rufipogon, </span></span><span class="species"><span class="species">Prunus persica, </span></span><span class="species"><span class="species">Brassica oleracea, </span></span><span class="species"><span class="species"><span class="species">Theobroma cacao and </span></span></span><span class="species"><span class="species">Amborella trichopoda)</span>. </span>In this release
we updated again many common model organisms. You can find a detailed
list of all the covered species on our website (<a href="http://omabrowser.org/cgi-bin/gateway.pl?f=InfoMatrix">http://omabrowser.org/cgi-bin/gateway.pl?f=InfoMatrix</a>).<br />
<br />
As usual, the data of the previous releases is still available for download.Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-40141819887506178612014-10-29T17:01:00.000+01:002014-10-29T17:01:24.820+01:00New OMA release with 1706 genomesWe have just released the latest update of the OMA Browser. It is the 17th release covering 1706 genomes.<br />
<br />
For this release we redesigned the webpage entirely and added some new functionalities such as the new synteny viewer, the newly predicted homeologs for wheat and the improved help pages.<br />
<br />
This release comprises now 1706 species, including 11 new plant genomes (Physcomitrella patens, Oryza brachyantha, Oryza glaberrima, Oryza sativa subsp. indica, Brachypodium distachyon, Aegilops tauschii, Triticum aestivum, Setaria italica, Solanum tuberosum and Selaginella moellendorffii)<b> </b>and 10 new animals, i.e. the alpaca, the spotted gar, the blind cave fish, the sheep, the red fire ant, the pacific oyster, the filarial nematode worm, the monarch butterfly, Drosophila yakuba and Drosophila mojavensis. In this release we updated again many common model organisms. You can find a detailed list of all the covered species on our website (<a href="http://omabrowser.org/cgi-bin/gateway.pl?f=InfoMatrix">http://omabrowser.org/cgi-bin/gateway.pl?f=InfoMatrix</a>).<br />
<br />
As usual, the data of the previous releases is still available for download.Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-72278267845372584492014-09-27T10:33:00.000+02:002014-09-27T10:35:01.489+02:00Try the new version of the OMA Browser!We have been working on a redesign of the omabrowser. If you are interested, please have a look at it and let us know what you think: <a href="http://cbrg-oma-test.ethz.ch/">http://cbrg-oma-test.ethz.ch</a>Christophe Dessimozhttp://www.blogger.com/profile/06599363465221194317noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-12753248594301361452014-03-05T21:30:00.000+01:002014-03-05T21:30:13.030+01:00Release 16 with 1613 genomesDear OMA users,<br />
<br />
We have just released the latest update of the OMA Browser. It is the 16th relase covering 1613 genomes.<br />
For
this release we added 5 new plant genomes and 2 new animals, i.e. the Domestic Duck and <i>Ficedula albicollis</i>, the collared flycatcher.<br />
In this release we updated again most of the common model organisms. <br />
<br />
As usual, the data of the previous releases is still available for download.<br />
Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-29510153524216305552014-02-27T10:27:00.000+01:002014-02-27T10:27:01.706+01:00Coming up: new release with 1613 genomesDear OMA users,<br />
<br />
<div class="post-body entry-content" id="post-body-3368532815865654178" itemprop="description articleBody">
we have finished the computation of a new data set with 1613 genomes.</div>
<div class="post-body entry-content" id="post-body-3368532815865654178" itemprop="description articleBody">
<br />
The
new data set will be available in the OMA Browser within the next days. This can cause a short interruption of the web server. Sorry for
any inconveniences. The data of the current release will afterwards be available in
the OMA Browser Archive.
</div>
Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-52470378925417442752014-02-27T08:37:00.002+01:002014-02-27T08:37:35.325+01:00Unscheduled Maintenance Dear OMA Browser users,<br />
<br />
due to some unscheduled maintenance efforts, the OMA Browser had to be shut down. We expect to finish the work by 10am CET.<br />
<br />
Sorry for any inconvenicene this may have caused.<br />
<br />Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-51988389326476660412013-08-12T11:09:00.001+02:002013-08-12T11:09:21.867+02:00New Release with 1544 SpeciesDear OMA users,<br />
<br />
we are pleased to announce a new OMA release covering 1544 genomes. For this release we added 58 Fungi genomes and 2 new animals, i.e. the European domestic ferret and the Southern platyfish.<br />
In this release we updated again all the common model organisms and most genomes from Ensembl (v70).<br />
<br />
From this release on, we provide also crosslinks to protein structures via <a href="http://www.proteinmodelportal.org/" target="_blank">Protein Model Portal</a> (a protal which provides access to various experimenatal and modeled protein structures).<br />
<br />
As usual, the data of the previous releases is still available for download.Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-44189585216982472832013-08-12T10:52:00.002+02:002013-08-12T10:52:29.263+02:00Moving to new releaeDear OMA users,<br />
<br />
on Monday, Aug 12, we will switch to a new release of the OMA browser. This will interrupt the service for a couple of hours. We apologize for the inconveniences this may cause.<br />
<br />
Regards,<br />
AdrianAdrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-63694891764468478782013-05-06T16:12:00.001+02:002013-05-06T16:12:09.335+02:00OMA Service backDear OMA users,<br />
<br />
the maintenance work have been successfully finished. The OMA Browser service is operating again normally. Sorry for any
inconveniences this may have caused. Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-76495113385052689502013-05-06T10:02:00.005+02:002013-05-06T13:50:25.533+02:00OMA downtime Our datacenter is currently down for maintenance work. It should be back up late afternoon on May 6th. <br />
<br />
<div wrap="">
Please accept our apologies for any inconvenience caused. </div>
<div wrap="">
<br /></div>
<div wrap="">
Kind regards</div>
<div wrap="">
<br /></div>
<div wrap="">
Adrian </div>
Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0tag:blogger.com,1999:blog-942887747888240334.post-61432581856866000052013-02-15T13:40:00.001+01:002013-02-15T13:40:24.056+01:00Service back to normalDear OMA users,<br />
<br />
the network problems seem to be solved. The service is operating again normally. Sorry for any inconveniences this may have caused.Adrian Ahttp://www.blogger.com/profile/17289155166160112234noreply@blogger.com0