Due to a planned maintenance window at our computing facility the OMA Browser will not be available on Wed 30. October 2019 between 8am and 6pm CET.
Apologies for the inconvenience this may cause.
Monday, October 14, 2019
Tuesday, July 16, 2019
25th OMA Release with 2288 genomes (Jun 2019)
We have just released the latest update of the OMA Browser. It is the 25th release covering 2288 genomes. As usually we provide updated HOGs, OMA Groups and gene centric orthology predictions across all domains of life.
In this release we added the following new genomes:
- 31 new Metazoa
- Eptatretus burgeri (Inshore hagfish)
- Anabas testudineus (Climbing perch)
- Seriola dumerili (Mediterranean greater amberjack)
- Scophthalmus maximus (Turbot)
- Oryzias melastigma (Marine medaka)
- Cyprinodon variegatus (Sheepshead minnow)
- Amphiprion ocellaris (Clown anemonefish)
- Pygocentrus nattereri (Red-bellied piranha)
- Ictalurus punctatus (Channel catfish)
- Heterocephalus glaber (Naked mole rat)
- Cavia aperea (Brazilian guinea pig)
- Cricetulus griseus (Chinese hamster)
- Cercocebus atys (Sooty mangabey)
- Macaca fascicularis (Crab-eating macaque)
- Macaca nemestrina (Pig-tailed macaque)
- Mandrillus leucophaeus (Drill)
- Colobus angolensis palliatus (Peters' Angolan colobus)
- Rhinopithecus bieti (Black snub-nosed monkey)
- Rhinopithecus roxellana (Golden snub-nosed monkey)
- Aotus nancymaae (Ma's night monkey)
- Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
- Propithecus coquereli (Coquerel's sifaka)
- Vulpes vulpes (Red fox)
- Ursus americanus (American black bear)
- Ursus maritimus (Polar bear)
- Phascolarctos cinereus (Koala)
- Chrysemys picta bellii (Western painted turtle)
- Sphenodon punctatus (Tuatara)
- Orchesella cincta (Springtail)
- Folsomia candida (Springtail)
- Culicoides sonorensis (Biting midge)
- 5 new Protist
- Plasmodium knowlesi (strain H)
- Ichthyophthirius multifiliis (strain G5) (White spot disease agent)
- Trypanosoma vivax (strain Y486)
- Trypanosoma congolense (strain IL3000)
- Trypanosoma cruzi (strain CL Brener)
- 1 new Viridiplantae
- Phaseolus angularis (Azuki bean)
- 18 new Fungi
- Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804)
- Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) (Nematode-trapping fungus)
- Penicillium italicum (Blue mold)
- Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371)
- Sphaerulina musiva (strain SO2202) (Poplar stem canker fungus)
- Beauveria bassiana (White muscardine disease fungus)
- Trichoderma harzianum
- Eutypa lata (strain UCR-EL1) (Grapevine dieback disease fungus)
- Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) (Hybrid yeast)
- Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / CCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) (Torula yeast)
- Ogataea parapolymorpha (strain ATCC 26012 / BCRC 20466 / JCM 22074 / NRRL Y-7560 / DL-1) (Yeast)
- Moniliophthora perniciosa (strain FA553 / isolate CP02) (Witches'-broom disease fungus)
- Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus)
- Microbotryum lychnidis-dioicae (strain p1A1 Lamole / MvSl-1064) (Anther smut fungus)
- Rhodotorula graminis (strain WP1)
- Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) (Dandruff-associated fungus)
- Wallemia ichthyophaga (strain EXF-994 / CBS 113033)
- Nosema ceranae (strain BRL01) (Microsporidian parasite)
- 35 new Bacteria
- Eggerthella sp. (strain YY7918)
- Corynebacterium lipophiloflavum (strain DSM 44291 / CCUG 37336)
- Mycobacterium gordonae
- Mycobacterium kansasii
- Mycobacterium shimoidei
- Mycobacterium chelonae
- Mycobacterium thermoresistibile (strain ATCC 19527 / DSM 44167 / CIP 105390 / JCM 6362 / NCTC 10409 / 316)
- Mycobacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849)
- Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP)
- Actinoplanes utahensis
- Lechevalieria aerocolonigenes (Nocardia aerocolonigenes)
- Kitasatospora aureofaciens
- Kitasatospora griseola
- Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602)
- Streptomyces collinus (strain DSM 40733 / Tu 365)
- Streptomyces davaonensis (strain DSM 101723 / JCM 4913 / KCC S-0913 / 768)
- Streptomyces fradiae
- Streptomyces rimosus subsp. rimosus (strain ATCC 10970 / DSM 40260 / JCM 4667 / NRRL 2234)
- Streptomyces rubellomurinus (strain ATCC 31215)
- Streptomyces sp. (strain SPB074)
- Streptomyces sp. (strain SirexAA-E / ActE)
- Streptomyces toyocaensis
- Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49)
- Bacteroides stercoris
- Porphyromonas cangingivalis
- Prevotella dentalis (strain ATCC 49559 / DSM 3688 / JCM 13448 / NCTC 12043 / ES 2772)
- Capnocytophaga gingivalis
- Flavobacterium frigoris (strain PS1)
- Flavobacterium sp. (strain CF136)
- Flavobacteria bacterium (strain BBFL7)
- Synechococcus elongatus (strain PCC 7942)
- Synechococcus sp. (strain ATCC 27167 / PCC 6312)
- Nitrospina gracilis (strain 3/211)
- Mycoplasma haemolamae (strain Purdue)
- Pedosphaera parvula (strain Ellin514)
- Gossypium hirsutum (Upland cotton)
- Populus trichocarpa (Western balsam poplar)
- Sorghum bicolor (Sorghum)
- Apis mellifera (Honeybee)
- Anopheles gambiae (African malaria mosquito)
- Eimeria tenella (Coccidian parasite)
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