We have released a new update of the OMA Browser. It is the 27th release covering now 2,424 complete genomes. As usually we provide updated HOGs, OMA Groups and gene centric orthology predictions across all domains of life, with updated crosslinks to the latest UniProtKB, RefSeq and Ensembl ids and up-to-date Gene Ontology annotations.
New genomes
In this release we added the following new genomes:
- 1 new mammal
- Manis javanica (Malayan pangolin)
- 1 new bird
- Anas platyrhynchos platyrhynchos (Northern mallard)
- 8 new fishes
- Anguilla anguilla (European freshwater eel)
- Mola mola (Ocean sunfish)
- Kryptolebias marmoratus (Mangrove killifish)
- Poecilia reticulata (Guppy)
- Astatotilapia calliptera (Eastern happy)
- Amphilophus citrinellus (Midas cichlid)
- Amphiprion percula (Orange clownfish)
- Salmo salar (Atlantic salmon)
- 9 new insects
- Drosophila busckii (Fruit fly)
- Drosophila suzukii (Spotted-wing drosophila fruit fly)
- Drosophila guanche (Fruit fly)
- Drosophila obscura (Fruit fly)
- Drosophila miranda (Fruit fly)
- Drosophila hydei (Fruit fly)
- Drosophila arizonae (Fruit fly)
- Drosophila navojoa (Fruit fly)
- Drosophila novamexicana
- 2 new non-vertebtata animals
- Asterias rubens (Common European starfish)
- Acanthaster planci (Crown-of-thorns starfish)
- 4 new plants
- Actinidia chinensis var. chinensis (Chinese soft-hair kiwi)
- Cynara cardunculus var. scolymus (Globe artichoke)
- Coffea canephora (Robusta coffee)
- Capsicum annuum (Capsicum pepper)
- 50 new fungi
- Protomyces lactucaedebilis
- Dactylellina haptotyla (strain CBS 200.50) (Nematode-trapping fungus)
- Exophiala dermatitidis (strain ATCC 34100 / CBS 525.76 / NIH/UT8656) (Black yeast)
- Exophiala mesophila (Black yeast)
- Endocarpon pusillum (strain Z07020 / HMAS-L-300199) (Lichen-forming fungus)
- Aspergillus carbonarius (strain ITEM 5010)
- Aspergillus niger
- Penicillium decumbens
- Penicillium nalgiovense
- Penicillium patulum
- Talaromyces islandicus
- Ajellomyces dermatitidis (strain ER-3 / ATCC MYA-2586)
- Ajellomyces capsulatus (strain H143) (Darling's disease fungus)
- Ajellomyces capsulatus (strain H88) (Darling's disease fungus)
- Ajellomyces capsulatus (strain NAm1 / WU24) (Darling's disease fungus)
- Arthroderma otae (strain ATCC MYA-4605 / CBS 113480)
- Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893)
- Trichophyton interdigitale (strain MR816)
- Paracoccidioides brasiliensis (strain Pb18)
- Botryosphaeria parva (strain UCR-NP2) (Grapevine canker fungus)
- Alternaria alternata (Alternaria rot fungus)
- Cochliobolus heterostrophus (strain C5 / ATCC 48332 / race O) (Southern corn leaf blight fungus)
- Marssonina brunnea f. sp. multigermtubi (strain MB_m1) (Marssonina leaf spot fungus)
- Colletotrichum gloeosporioides (strain Cg-14) (Anthracnose fungus)
- Metarhizium acridum (strain CQMa 102)
- Fusarium poae
- Stachybotrys chlorohalonata (strain IBT 40285)
- Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
- Candida auris (Yeast)
- Lachancea fermentati
- Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) (Yeast)
- Naumovozyma dairenensis (strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 / NRRL Y-12639)
- Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7) (Yeast)
- Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) (Yeast)
- Trametes pubescens (White-rot fungus)
- Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392) (White button mushroom)
- Armillaria gallica (Bulbous honey fungus)
- Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
- Hypholoma sublateritium (strain FD-334 SS-4)
- Puccinia triticina (isolate 1-1 / race 1 (BBBD)) (Brown leaf rust fungus)
- Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951)
- Malassezia sympodialis (strain ATCC 42132) (Atopic eczema-associated yeast)
- Gonapodya prolifera (strain JEL478)
- Piromyces sp. (strain E2)
- Rozella allomycis (strain CSF55)
- Trachipleistophora hominis (Microsporidian parasite)
- Rhizophagus irregularis (strain DAOM 197198w)
- Absidia glauca (Pin mould)
- Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (Mucormycosis agent)
- Syncephalastrum racemosum (Filamentous fungus)
- 10 new proteobacteria
- Hyphomicrobium sulfonivorans
- Rhodovulum sulfidophilum
- Magnetospira sp. (strain QH-2)
- Sphingopyxis macrogoltabida
- Solemya velum gill symbiont
- Halomonas anticariensis (strain DSM 16096 / CECT 5854 / LMG 22089 / FP35)
- Avibacterium paragallinarum
- Moraxella catarrhalis (strain BBH18)
- Salinisphaera hydrothermalis (strain C41B8)
- Desulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759)
- 12 new other bacteria
- Mycolicibacterium chubuense
- Micromonospora sp. (strain ATCC 39149 / NRRL 15099 / SCC 1413)
- Streptomyces glaucescens
- Streptomyces lincolnensis
- Synechococcus sp. (strain WH7805)
- Alicyclobacillus acidoterrestris (strain ATCC 49025 / DSM 3922 / CIP 106132 / NCIMB 13137 / GD3B)
- Bacillus circulans
- Thermoactinomyces vulgaris
- Enterococcus faecium (strain ATCC BAA-472 / TX0016 / DO)
- Enterococcus italicus (strain DSM 15952 / LMG 22039 / TP 1.5)
- Enterococcus thailandicus
- Anaerostipes hadrus
Updated Genomes:
Additionally we updated the following genomes:
- Mus musculus (Mouse): Ensembl 102; GRCm38.p6; GCA_000001635.8
- Homo sapiens (Human): Ensembl 102; ; GRCh38
- Bos taurus (Bovine): Ensembl 102; ARS-UCD1.2; GCA_002263795.2
- Gallus gallus (Chicken): Ensembl 102; GRCg6a; GCA_000002315.5
- Strongylocentrotus purpuratus (Purple sea urchin): Ensembl Metazoa 49; Spur_5.0; GCA_000002235.4
- Solanum lycopersicum (Tomato): Ensembl Plants 49; SL3.0; GCA_000188115.3
