We have released a new version of the OMA Browser. It is the 29th release covering now 2,564 complete genomes. As usually we provide updated HOGs, OMA Groups and gene centric orthology predictions across all domains of life, with updated crosslinks to the latest UniProtKB, RefSeq and Ensembl ids and up-to-date Gene Ontology annotations.
New genomes
In this release we added the following new genomes:
- 3 new Mammals
- Tachyglossus aculeatus (Short-beaked echidna)
- Cebus imitator (Panamanian white-faced capuchin)
- Ceratotherium simum simum (Southern white rhinoceros)
- 4 new Birds
- Haliaeetus leucocephalus (Bald eagle)
- Falco tinnunculus (Common kestrel)
- Corvus moneduloides (New Caledonian crow)
- Tyto alba (Barn owl)
- 6 new Other vertebrates
- Scyliorhinus torazame (Cloudy catshark)
- Chiloscyllium punctatum (Brownbanded bambooshark)
- Crocodylus porosus (Saltwater crocodile)
- Salvator merianae (Argentine black and white tegu)
- Varanus komodoensis (Komodo dragon)
- Bufo bufo (European toad)
- 6 new Insects
- Helicoverpa armigera (Cotton bollworm)
- Vanessa tameamea (New Caledonian crow)
- Papilio machaon (Old World swallowtail butterfly)
- Anopheles stephensi (Indo-Pakistan malaria mosquito)
- Anopheles sinensis (Mosquito)
- Cimex lectularius (Bed bug)
- 3 new Other arthropotes
- Varroa destructor (Honeybee mite)
- Stegodyphus mimosarum (African social velvet spider)
- Tigriopus californicus (Marine copepod)
- 9 new Plants
- Chara braunii (Braun's stonewort)
- Triticum turgidum subsp. durum (Durum wheat)
- Miscanthus sinensis (Japanese silver grass)
- Setaria viridis (Green bristlegrass)
- Beta vulgaris subsp. vulgaris (Beet)
- Kalanchoe fedtschenkoi (Lavender scallops)
- Erythranthe guttata (Yellow monkey flower)
- Quercus lobata (Valley oak)
- Eutrema salsugineum (Saltwater cress)
- 29 new Fungi
- Aspergillus brasiliensis (strain CBS 101740 / IMI 381727 / IBT 21946)
- Aspergillus novofumigatus (strain IBT 16806)
- Aspergillus aculeatus (strain ATCC 16872 / CBS 172.66 / WB 5094)
- Aspergillus calidoustus
- Aspergillus violaceofuscus (strain CBS 115571)
- Petromyces alliaceus
- Penicillium roqueforti (strain FM164)
- Trichophyton rubrum (strain ATCC MYA-4607 / CBS 118892) (Athlete's foot fungus)
- Coccidioides posadasii (strain RMSCC 757 / Silveira) (Valley fever fungus)
- Uncinocarpus reesii (strain UAMH 1704)
- Aureobasidium subglaciale (strain EXF-2481)
- Baudoinia panamericana (strain UAMH 10762) (Angels' share fungus)
- Uncinula necator (Grape powdery mildew)
- Scytalidium lignicola (Hyphomycete)
- Cordyceps confragosa
- Fusarium culmorum
- Pseudallescheria apiosperma
- Ophiostoma piceae (strain UAMH 11346) (Sap stain fungus)
- Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
- Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799)
- Rosellinia necatrix (White root-rot fungus)
- Diutina rugosa (Yeast)
- Spizellomyces punctatus (strain DAOM BR117)
- Enterocytozoon bieneusi (strain H348) (Microsporidian parasite)
- Nosema bombycis (strain CQ1 / CVCC 102059) (Microsporidian parasite)
- Vittaforma corneae (strain ATCC 50505) (Microsporidian parasite)
- Edhazardia aedis (strain USNM 41457) (Microsporidian parasite)
- Nematocida parisii (strain ERTm3) (Nematode killer fungus)
- Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371) (Nematode killer fungus)
- 9 new Protists
- Trypanosoma rangeli
- Plasmodium relictum
- Plasmodium falciparum (isolate Camp / Malaysia)
- Plasmodium falciparum (isolate HB3)
- Plasmodium cynomolgi (strain B)
- Plasmodium gonderi
- Symbiodinium microadriaticum (Dinoflagellate)
- Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144)
- Saprolegnia diclina (strain VS20)
Updated genomes
the following species were updated for this release.
- Takifugu rubripes (Japanese pufferfish)
- Xiphophorus maculatus (Southern platyfish)
- Oreochromis niloticus (Nile tilapia)
- Gadus morhua (Atlantic cod)
- Esox lucius (Northern pike)
- Danio rerio (Zebrafish)
- Ornithorhynchus anatinus (Duckbill platypus)
- Dipodomys ordii (Ord's kangaroo rat)
- Cavia porcellus (Guinea pig)
- Rattus norvegicus (Rat)
- Macaca mulatta (Rhesus macaque)
- Papio anubis (Olive baboon)
- Gorilla gorilla gorilla (Western lowland gorilla)
- Pongo abelii (Sumatran orangutan)
- Nomascus leucogenys (Northern white-cheeked gibbon)
- Callithrix jacchus (White-tufted-ear marmoset)
- Carlito syrichta (Philippine tarsier)
- Felis catus (Cat)
- Equus caballus (Horse)
- Monodelphis domestica (Gray short-tailed opossum)
- Taeniopygia guttata (Zebra finch)
- Xenopus tropicalis (Western clawed frog)
- Tribolium castaneum (Red flour beetle)
- Drosophila melanogaster (Fruit fly)
- Musa acuminata subsp. malaccensis (Wild banana)
