We have released a new update of the OMA Browser. It is the 28th release covering now 2,496 complete genomes. As usually we provide updated HOGs, OMA Groups and gene centric orthology predictions across all domains of life, with updated crosslinks to the latest UniProtKB, RefSeq and Ensembl ids and up-to-date Gene Ontology annotations.
New genomes
In this release we added the following new genomes:
- 5 new mammals
- Bos indicus x Bos taurus (Hybrid cattle)
- Balaenoptera musculus (Blue whale)
- Suricata suricatta (Meerkat)
- Rhinolophus ferrumequinum (Greater horseshoe bat)
- Vombatus ursinus (Common wombat)
- 4 new birds
- Phasianus colchicus (Common pheasant)
- Chloebia gouldiae (Gouldian finch)
- Strigops habroptila (Kakapo)
- Athene cunicularia (Burrowing owl)
- 12 new fishes and snakes
- Callorhinchus milii (Ghost shark)
- Echeneis naucrates (Live sharksucker)
- Sparus aurata (Gilthead sea bream)
- Oryzias javanicus (Javanese ricefish)
- Gambusia affinis (Western mosquitofish)
- Salarias fasciatus (Jewelled blenny)
- Oreochromis aureus (Israeli tilapia)
- Salmo trutta (Brown trout)
- Electrophorus electricus (Electric eel)
- Sinocyclocheilus grahami (Dianchi golden-line fish)
- Podarcis muralis (Wall lizard)
- Pseudonaja textilis (Eastern brown snake)
- 12 new non-vertebrata animals
- Patiria miniata (Bat star)
- Lytechinus variegatus (Green sea urchin)
- Toxocara canis (Canine roundworm)
- Wuchereria bancrofti
- Necator americanus (Human hookworm)
- Angiostrongylus costaricensis (Nematode worm)
- Haemonchus contortus (Barber pole worm)
- Haemonchus placei (Barber's pole worm)
- Nippostrongylus brasiliensis (Rat hookworm)
- Romanomermis culicivorax (Nematode worm)
- Echinococcus multilocularis (Fox tapeworm)
- Taenia multiceps (Coenurus tapeworm)
- 7 new plants
- Asparagus officinalis (Garden asparagus)
- Papaver somniferum (Opium poppy)
- Cannabis sativa (Hemp)
- Prunus dulcis (Almond)
- Rosa chinensis (China rose)
- Eucalyptus grandis (Flooded gum)
- Citrus clementina (Clementine)
- 21 new fungi
- Pneumocystis murina (strain B123) (Mouse pneumocystis pneumonia agent)
- Aspergillus tubingensis (strain CBS 134.48)
- Penicillium digitatum (strain PHI26 / CECT 20796) (Green mold)
- Epicoccum nigrum (Soil fungus)
- Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa)
- Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4)
- Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (Soil fungus)
- Candida maltosa (strain Xu316) (Yeast)
- Clavispora lusitaniae (strain ATCC 42720) (Yeast)
- Eremothecium cymbalariae (strain CBS 270.75 / DBVPG 7215 / KCTC 17166 / NRRL Y-17582) (Yeast)
- Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) (Brown rot fungus)
- Armillaria ostoyae (Armillaria root rot fungus)
- Serpula lacrymans var. lacrymans (strain S7.3) (Dry rot fungus)
- Dacryopinax primogenitus (strain DJM 731) (Brown rot fungus)
- Trichosporon asahii var. asahii (strain CBS 8904) (Yeast)
- Rhodosporidium toruloides (Yeast)
- Kalmanozyma brasiliensis (strain GHG001) (Yeast)
- Wallemia mellicola (strain ATCC MYA-4683 / CBS 633.66)
- Allomyces macrogynus (strain ATCC 38327)
- Rhizopus microsporus
- Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638)
- 3 new proteobacteria
- Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6)
- Legionella spiritensis
- Desulfatibacillum aliphaticivorans
- 6 new other bacteria
- Streptomyces netropsis
- Niabella drilacis (strain DSM 25811 / CCM 8410 / LMG 26954 / E90)
- Roseivirga ehrenbergii (strain DSM 102268 / JCM 13514 / KCTC 12282 / NCIMB 14502 / KMM 6017)
- Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901)
- Chryseobacterium sp. (strain P1-3)
- Flavobacteria bacterium (strain MS024-2A)
- 2 new Archaea
Updated genomes
Additionally we updated the following genomes:
- Branchiostoma floridae (Florida lancelet)
- Mus musculus (Mouse)
- Hypsibius dujardini (Water bear)
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